BAC Information

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BAC

Clone NameMSMg01-070F24
Chromosome11 (Build37)
Map Location 14,838,835 - 14,839,257
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673
Downstream geneLOC432537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070F24.T7 (MSMg01no070_f24.b1)MSMg01-070F24.TJ (MSMg01no070_f24.g1)
ACCAG294412AG294413
length694697
length of high quality
(start - end)
451 (40 - 490)240 (70 - 309)
definitionCHROMAT_FILE: MSMg01no070_f24.b1 PHD_FILE: MSMg01no070_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:25 2005CHROMAT_FILE: MSMg01no070_f24.g1 PHD_FILE: MSMg01no070_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTAAACGACTCCTATATTTCCAGGATCCGCGGAATTCT
GTCCATGTCCAGGTTTCAATAGTACACAGCAAGGTTAGAATATGCCATTT
TTGCTGACATTGTAGTTATAGTAATTCTCAATTTGTAGCGATCATACATA
TTGTATTCCTCTTAGGAGTGTAAATTGAGTCTTCATTATTATTTTTACAT
TCACTCTGTTATTTTTGTGTTCTTTGAGGAAGCCATCATTCTTTTTTTCT
TTCCTTTCTAGTCCATTCAAAAGGAGACAAATCACCCTTGTTCTTGGAAA
CTTATTCAACCATTATGAGCTAGTGAAGTCATGGATCTTATAGAAAAATA
TACTACTAACACTTGACTAAATTAGCATTCTAATTCAAACCTAATTACAT
TTTAAGCATCTATCCTTATATCCACAAATAAGTGTAGCTCTTATGACCTA
TTAAAGAAACTTCTCTCTATGATATAAAGAGACCCTTAGTGCAAACTACA
ATGAGTATAAATGCTTTGGACAGATGACTGTTTGGTACGCACCATCAGTT
GATATATCTATAATACACCTCAGATGGTTGTAAACTGCAATAGCCCAAAG
GTCAAAGAAAGTTTCTGTTGGAACTATGTTTCATATATATAAAAGAAATT
TTTATTTTTAATCTTGAGGCCAGAGAATTATTTTTTTATCTGTC
TGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCACATTCTTCCATTTCTATTATTCTTAGT
TTTCATTTTCTCATTGTGTCCTGAATTTCCTGAATATTTTGATTTAGGAG
CTTTTTACACTTCGTTTTTGGTTTTTTGTTTGTTTGTTTGTTTTTGGTTT
TTGACCAGTGTGTTAATATTTTCTATGGTATCTTCTACTCTTGAAAGTCT
CTCTTCTATCTCTTGTACTCTTTTGGTAATCATTTCAGACTCCTGATCTC
TTTTCTAGATTTTCTATCTCCCTTTGTGACTTCTTTATTGTTTTTAATAT
CCATTTCTAGATCCTGTATGGTTTTGTTCAATTCCTTCACCTGTTTTGTT
TTGTTTTGTTTTGTTTTGTTTTTCCTGTGTATCTTTAAGGGGTTTTTGCC
TTTACTCTTTAAGGCTTCTACCTGTTTACCTATGTTGATCTCTATTTCCT
TTAAGGGAGCTATTTATGTCCTTCTTAAAGTCTTCTATAATCAACAGGAG
ATATGATTTTATATCTTGGATCTTGTTTTTTCCGAGTGATGGTGGTATTC
AGGACCTGCTGCGGTGGGAAAAACTGGGTTATCGATGATTGCTAGTAACC
TTGATTTTTTGTTGCTTATGTTTTTTGAACATGCCTCTTTCCATCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_f24.b1 MSMg01no070_f24.b1 CHROMAT_FILE:
MSMg01no070_f24.b1 PHD_FILE: MSMg01no070_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:25 2005
         (451 letters)



>mm_chr11_14838835_14839685
          Length = 851

 Score =  772 bits (399), Expect = 0.0
 Identities = 417/423 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtccatgtccaggtttcaatagtacacagcaaggttagaatatgccatttttg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaattctgtccatgtctaggtttcaatagtacacagcaaggttagaatatgccatttttg 364

                                                                       
Query: 65  ctgacattgtagttatagtaattctcaatttgtagcgatcatacatattgtattcctctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctgacattgtagttatagtaattctcaatttgtagcgatcatacatattgtattcctctt 304

                                                                       
Query: 125 aggagtgtaaattgagtcttcattattatttttacattcactctgttatttttgtgttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aggagtgtaaattgagtcttcattattatttttacattcactctgttatttttgtgttct 244

                                                                       
Query: 185 ttgaggaagccatcattctttttttctttcctttctagtccattcaaaaggagacaaatc 244
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 243 ttgaggaagccatcattcttcttttctttcctctctagtccattcaaaaggagacaaatc 184

                                                                       
Query: 245 acccttgttcttggaaacttattcaaccattatgagctagtgaagtcatggatcttatag 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 183 acccttgttcttggaaacttattcaaccaatatgagctagtgaagtcatggatcttagag 124

                                                                       
Query: 305 aaaaatatactactaacacttgactaaattagcattctaattcaaacctaattacatttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aaaaatatactactaacacttgactaaattagcattctaattcaaacctaattacatttt 64

                                                                       
Query: 365 aagcatctatccttatatccacaaataagtgtagctcttatgacctattaaagaaacttc 424
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 63  aagcatctatccttatatccacaaataagtgtagctcttatgacctatcaaagaaacttc 4

              
Query: 425 tct 427
           |||
Sbjct: 3   tct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)