BAC Information

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BAC

Clone NameMSMg01-071A14
Chromosome11 (Build37)
Map Location 107,441,357 - 107,441,605
singlet/doubletsinglet
Overlap geneHelz
Upstream geneTex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik
Downstream geneCacng1, Cacng4, Cacng5, Prkca, Apoh, LOC100041381, Ccdc46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071A14.T7 (MSMg01no071_a14.b1)MSMg01-071A14.TJ (MSMg01no071_a14.g1)
ACCAG294916AG294917
length712718
length of high quality
(start - end)
251 (69 - 319)79 (186 - 264)
definitionCHROMAT_FILE: MSMg01no071_a14.b1 PHD_FILE: MSMg01no071_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:18 2005CHROMAT_FILE: MSMg01no071_a14.g1 PHD_FILE: MSMg01no071_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTAAACGACTACTATAGTTCCAGAATAAGCGGAATTCAT
TTGTTTTAACCCGAGTAGAATTTAAAATGCTAAGTAGTTGAGCAAGCCTG
CTCTACATAGTGAGTCCCATGAGAGCCAGAGCTATGTAGAGCGAGACGCT
GTCTTTATATTAAAATAAGAAAAAAAAACTAAATAAAACAGAAAAATGAA
AATTTCCCCTCACCAACATTTATTCTTCAATGACTTTTCACAACTCTTAA
AATCTCCTGGGACATCTTTATGCATATTCCCCAAATGAGATGACTGTATC
AACTTCTCAAGAACTCATGTGGGGGCTGGTGAGATGGCTCAGAGGTTAAG
AGTACCGACTGCGCCGGGCGTGGTGGCGCACGCCTTTAATCCCATCACTT
GTGAGGCATAGCCAGGCGGATTTCTGATTTCGAGGCCAGTCTGCTCTACA
AAGTGAGTTTCCAGGACAGACAGAGCTACACGAAGAAACCCTGTCTGAGA
AAACTTTTTTTTTAATTTAAAAGAATACCGATTGTTCTTCCTAAGGTCCA
GATGTTCAATCCCAACAAACACATGGTGTATCACAAACCATCGTAAAGGA
AAGGACCTTTTTCTGGAGGGTTTGAAAAACACCTACCATGTTACTTACTT
TCAATAAATTAATGGAATCTTTTAAAAAAAAAAAAAATCCATGATAGGTG
AAATTTTAATAA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGACCAGCCAGGCCAGCCAGGGCCACACA
GCAAGACCAAGACTTTTTTGTTTTTTGTTTTAAGATTTACCTTATGTGTA
TGAGTCCACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCC
CATTACAGATGGTTGTTAGCCACCATGTGGTTGCTGGGAATTGAACTCAG
GACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCTTTTCTCTAG
CCCAAGGCCTTGATTTATTTTTGAGTATGGAGAGGGGACTGATAAAGTGA
CTCATTGGGTAAGAGGACCTGAGTTCATATCCCCAGCACCTTATGTAACA
GCTTATCATGGCTTCCTGCCCTGTAATCCAGTGCTAGAGCTTCATGGTTG
GTATTGTTATGCGGTTGCAACTAGGAAACTTGCTGAGCTTACTGTCTGTT
TGATTAATTGTATATTTATACGATGTTCCTTGATGTGCTCTGTTTAAAAT
GGCTTGACTATACATTGCCTCATCATATTTCACCTTAGGATAATTAATTA
TATATTCTTGTATCCCTGTCTCTTGCTTCACCATTGATTTTATATTATTT
TTATTTTCTCTATATTTCTTCCATTTGTTGCTGGTAATGTACTCCGAAAC
ACTTGTTACGCACTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_a14.b1 MSMg01no071_a14.b1 CHROMAT_FILE:
MSMg01no071_a14.b1 PHD_FILE: MSMg01no071_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:18 2005
         (251 letters)



>mm_chr11_107441071_107441721
          Length = 651

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttaaaatgctaagtagttgagcaagcctgctctacatagtgagtcccatgagagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 535 aatttaaaatgctaagtagttgagcaagcctgctctacatagtgagtcccaggagagcca 476

                                                                       
Query: 61  gagctatgtagagcgagacgctgtctttatattaaaataagaaaaaaaaactaaataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gagctatgtagagcgagacgctgtctttatattaaaataagaaaaaaaaactaaataaaa 416

                                                                       
Query: 121 cagaaaaatgaaaatttcccctcaccaacatttattcttcaatgacttttcacaactctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cagaaaaatgaaaatttcccctcaccaacatttattcttcaatgacttttcacaactctt 356

                                                                       
Query: 181 aaaatctcctgggacatctttatgcatattccccaaatgagatgactgtatcaacttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aaaatctcctgggacatctttatgcatattccccaaatgagatgactgtatcaacttctc 296

                    
Query: 241 aagaactca 249
           |||||||||
Sbjct: 295 aagaactca 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)