BAC Information

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BAC

Clone NameMSMg01-071B14
Chromosome11 (Build37)
Map Location 80,700,052 - 80,700,315
singlet/doubletsinglet
Overlap geneAccn1
Upstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3
Downstream gene1700071K01Rik, 5530401A14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071B14.T7 (MSMg01no071_b14.b1)MSMg01-071B14.TJ (MSMg01no071_b14.g1)
ACCAG294964AG294965
length731703
length of high quality
(start - end)
268 (45 - 312)106 (73 - 178)
definitionCHROMAT_FILE: MSMg01no071_b14.b1 PHD_FILE: MSMg01no071_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:23 2005CHROMAT_FILE: MSMg01no071_b14.g1 PHD_FILE: MSMg01no071_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCTACCTTTCGCAAGCTCCCTGGACCGCCCCTTCTCCATCCATCCACA
GGAAAGCTGGGTTAGCCAGACCCTTGAATGCCGAGGGCTCTAACAGAGTG
TGGTACTTAATTTTCCCTCTGCAGCGAGAACATTCTTGTTCTGGATATAT
TTTTTGAGGCGCTCAATTACGAGACAATTGAACAGAAGAAGGCGTATGAA
GTTGCTGCCTTACTTGGTGAGTTGTAATGTCTGCCACATAAATTTCCACA
TCTCTTAGGAGGGTTGAGGTTGGGGAGGCGCCCCCCCCTCTTTCCTTTCT
TTCTTTTCTATTCCTATCTTTTCCTCCTTTTTAATCTCCTATAATTATCA
TTACTACCCCCCCTTTTGTTCCCCTCTATTTATCCACCCCCTCACTTCAC
CTCTTTTTCCCCCCTCCCTCCCTTCTACTCCTTTCCCGATTCCCCCACCT
TTTCCCCCTTTCTCCCCTTCCTTTTTTCTCCCTCACTACCTTTTATTTAC
ACAACCATTCAACGCCTCTCGTCTTTTTTTTCTCCCTTTCCCCCCCCCCC
CCTTTTTTTTTTTCCCCTTCCTTCCCCCCCTCTCCGCTTTTTATTCCATT
TTTCGACTCCTCCCCTCCTCCTCCCCTTAATCCCCACATCTTCCTCCAAC
CTTATCTCCATTTTTCCCTCGCTTTCTCCCG
AATGCATGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCATATA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATTAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGCTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGCTCCTCTTAAAATTGGATATAGTACTATTGGAGGATCCAGC
AATACCTCTCCTGGTTATATATCCAGAAGATGTTCCTACTGGTAAGAAGT
ACTCTTGTTCCACTATGTTTATAGCATTCTTATTTATAATAGCCAGATTT
TGTAATTGATCCCAGATGTTCCTTAATAGAGCAACGCATATAGATAACGT
GTTACATCTACCTTATGCAGTATCATTCCTCTTTTAACAAGAGTGAACTT
ATGAAATTTTCAGGTTAATGGATGGACTTGGCCTTATACCCTCCTTGATC
GATGTAACACTTTTCTTAATTGATTTTTCACTCTTATGCACTTCCTGTTT
TATTGTTATATTATCCCCCTCTCCTATAATATCTAAGATATACGTAATCT
CTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_b14.b1 MSMg01no071_b14.b1 CHROMAT_FILE:
MSMg01no071_b14.b1 PHD_FILE: MSMg01no071_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:23 2005
         (268 letters)



>mm_chr11_80699848_80700515
          Length = 668

 Score =  474 bits (245), Expect = e-138
 Identities = 260/265 (98%), Gaps = 2/265 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacctttcgca-agctccctggaccgccccttctccatccatccacaggaaagc 63
           ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaattctaccttt-ggacagctccctggaccgccccttctccatccatccacaggaaagc 410

                                                                       
Query: 64  tgggttagccagacccttgaatgccgagggctctaacagagtgtggtacttaattttccc 123
           |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 409 tgggttagccagtcccttgaatgccgagggctctaacagagtgtggtgcttaattttccc 350

                                                                       
Query: 124 tctgcagcgagaacattcttgttctggatatattttttgaggcgctcaattacgagacaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tctgcagcgagaacattcttgttctggatatattttttgaggcgctcaattacgagacaa 290

                                                                       
Query: 184 ttgaacagaagaaggcgtatgaagttgctgccttacttggtgagttgtaatgtctgccac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttgaacagaagaaggcgtatgaagttgctgccttacttggtgagttgtaatgtctgccac 230

                                    
Query: 244 ataaatttccacatctcttaggagg 268
           |||||||||||||||||||||||||
Sbjct: 229 ataaatttccacatctcttaggagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)