BAC Information

Click to search

BAC

Clone NameMSMg01-072C06
Chromosome11 (Build37)
Map Location 45,379,119 - 45,379,346
singlet/doubletsinglet
Overlap genenone
Upstream geneEbf1, LOC382510
Downstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072C06.T7 (MSMg01no072_c06.b1)MSMg01-072C06.TJ (MSMg01no072_c06.g1)
ACCAG295757AG295758
length685723
length of high quality
(start - end)
234 (80 - 313)60 (89 - 148)
definitionCHROMAT_FILE: MSMg01no072_c06.b1 PHD_FILE: MSMg01no072_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:46 2005CHROMAT_FILE: MSMg01no072_c06.g1 PHD_FILE: MSMg01no072_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATATTTGCGGCGCTCAACGACTCCTAATTTCCGACGGGGGCGGAAT
CANGNGTTTGACTTCACTAGGCATCAANAGCATCATTGCCAAGGCTCTGC
GGCTTCTTGTACATATAGCACTGTCCAGGCCACATCGAATCTATGAAAAA
GCGTCTCCTTCTCCTCCTTACCCAGCATGTAGTGAGTAGTGGGGCATGGG
GCAGGGGGCAGGGGGCAGCAGAGGTGTGGGAGTGGAGCGGTCAATATTTA
TGCATTAGTTCATCTCATTGGCTGCTTTTCTCAATGTCTACTTGGAACAT
AGACATTTGGTTTACTANGTTTTGCGCACACACACACACTCATCTCACCT
CAAAGGTTTGAGAGACCACCATTACTTTCTCTGAGAAATGTCTGTTGTAA
GATAGAACAAATCCTTGACAATCACAACTCCCCATAGTGCACTCAAAAAG
TCTCTACCTTACGGGGCAATTAGCATACTTTGAGCTACCTATTAGCCATA
AATATATCATAACTGCTACCCATTCTTGCTGGGGACACTTAATTCTCTTC
CTTCTCATGTGGCGTGTGTGTGTGTGTGTGTGTGTGTTCCAAGTGTGGGC
TTATATGTACACTCTATGGCACATATCAGGCTATGGGCTGATATTTTCTG
TTTATTTCTCCATCTTACGCCTATGAGCATTTATG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGNAACCGGGGG
NGACACNANNAGAAGATAACCGGACCCACGCTTGNNNGACTGGCTAAGCT
TAAATCAAAATTAAGTTCCCTTTCTCTACACTCCTCCTATCACAGCTCTG
GACTGGGAGTCTAATTCTCTTTAAAGCAAATTGGACTGAGAGTTGTGAGG
CCCCATGGGCAAAGCTTGTAATGGCTGATAAGTACATGAAGGGTATCTCG
GATGTCAGGCATGAAAACATTCTTGTGTCTACNGNAAGTAGGTTACTCCG
AGGGGACAGTGTATAANTTTCCCCCTCTAACTCCAATCATGTTAGTAGAT
TTCTNTGGCGNTCCTAACTAATGGTTTTGGTGGCAAATATTGTTACCCCT
TGGAGAGTGGAAACGGGGCTTNTTGGAAGTCAGATGTGAGGGCAGAAAGT
TGACTACTGTGTGAGATGAGAACAATAAGTCACCAAGTGCCCACGCTCTT
GTCTAAACAATAAAGCTAAATGCTCCGTGAAGGTGGGAATAGTGTCTCAT
CTTGCTTAGTTTTACTCACAAATTAAGCAGGTCAAACCCCCCCCCCCAAC
AGTCAAAATCCCTGAGGAGTCTATGACACAAAAGCAATGGCAGGGACACT
GTGCCCCATCCTCAATCCGCTGTGATTTTATTTTGTTGCGAACCAGCAAA
TGACTCAATTATCCCAAACATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_c06.b1 MSMg01no072_c06.b1 CHROMAT_FILE:
MSMg01no072_c06.b1 PHD_FILE: MSMg01no072_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:46 2005
         (234 letters)



>mm_chr11_45378919_45379548
          Length = 630

 Score =  342 bits (177), Expect = 8e-99
 Identities = 217/233 (93%), Gaps = 6/233 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatcattgccaaggctctgcggcttcttgtacatatagcactgtccaggccacatcgaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 201 gcatcattgccaaggctctgcggcttcttgtacatataacactgtccaggctacatcgaa 260

                                                                       
Query: 61  tctatgaaaaagcgtctccttctcctccttacccagcatgtagtgagtagtggggcatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctatgaaaaagcgtctccttctcctccttacccagcatgtagtgagtagtggggcatgg 320

                                                                       
Query: 121 ggcagggggcagggggcagcagaggtgtgggagtggagcggtcaatatttatgcattagt 180
           ||||||| |||||||||||||||||||||||||     | ||||| |   ||||||||| 
Sbjct: 321 ggcagggtgcagggggcagcagaggtgtgggag-----cagtcaacagggatgcattagc 375

                                                                
Query: 181 tcatctcattggctgcttttctcaatgtctacttggaacat-agacatttggt 232
           ||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 376 tcatctcattggctgcttttctcaatgtctacttggaacaacagacatttggt 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 630
Length adjustment: 9
Effective length of query: 225
Effective length of database: 621
Effective search space:   139725
Effective search space used:   139725
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)