Query= MSMg01no072_i13.b1 MSMg01no072_i13.b1 CHROMAT_FILE:
MSMg01no072_i13.b1 PHD_FILE: MSMg01no072_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:18 2005
(450 letters)
>mm_chr11_90353922_90354773
Length = 852
Score = 820 bits (424), Expect = 0.0
Identities = 442/448 (98%), Gaps = 2/448 (0%)
Strand = Plus / Minus
Query: 5 gaattcaggaaat-gccactagttacttaccattagttttcattgcagaaagatatcatg 63
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 652 gaattcaggaaatggccactagctacttaccattagttttcattgcggaaagatatcatg 593
Query: 64 tcaagaaagtacaacgtcggcaaatcatcgccttacaaagatcacgaattcaaagcttcc 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 592 tcaagaaagtacaacgtcggcagatcatcgccttacaaagatcacgaattcaaagcttcc 533
Query: 124 tatttgtaaaaatttaaggaagaatccaagagatgcctggcagttttcatggc-tttttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 532 tatttgtaaaaatttaaggaagaatccaagagatgcctggcagttttcatggcttttttt 473
Query: 183 tttcctgttctgtttggtgggtgataaagcagagatgcagtttatagcatgaagtcgaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tttcctgttctgtttggtgggtgataaagcagagatgcagtttatagcatgaagtcgaga 413
Query: 243 gaagtcttggaatcccatgtgtagatcacactcatcagccaactgctcacttccagaaac 302
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 412 gaagtcttggaatcccatgtgtagatcacactcaacagccaactgctcacttccagaaac 353
Query: 303 attccccttctggagacaaacctactccttgatacactgcattgatcacgtctggttcct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 attccccttctggagacaaacctactccttgatacactgcattgatcacgtctggttcct 293
Query: 363 gggagagtttatgccctgtgctgtatagagggtagaaaagggaaccaccatattctaatt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gggagagtttatgccctgtgctgtatagagggtagaaaagggaaccaccatattctaatt 233
Query: 423 tgtatccagcctcagccgatgctcactg 450
||||||||||||||||||||||||||||
Sbjct: 232 tgtatccagcctcagccgatgctcactg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 852
Length adjustment: 10
Effective length of query: 440
Effective length of database: 842
Effective search space: 370480
Effective search space used: 370480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_i13.g1 MSMg01no072_i13.g1 CHROMAT_FILE:
MSMg01no072_i13.g1 PHD_FILE: MSMg01no072_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:19 2005
(481 letters)
>mm_chr11_90190024_90190903
Length = 880
Score = 899 bits (465), Expect = 0.0
Identities = 477/481 (99%), Gaps = 1/481 (0%)
Strand = Plus / Plus
Query: 1 tcagccacagtaggaatattagccaacttcaacaacatagaagaaagccatttcagcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagccacagtaggaatattagccaacttcaacaacatagaagaaagccatttcagcaac 260
Query: 61 acaacgccagagctcagtctcctatagtttcaactgggtgattgattgctgatgggaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaacgccagagctcagtctcctatagtttcaactgggtgattgattgctgatgggaaat 320
Query: 121 caatcctattgacacagtcatggggaagcactactggtatgtagtgggtaaacaccaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatcctattgacacagtcatggggaagcactactggtatgtagtgggtaaacaccaagg 380
Query: 181 atgcggatgaacattctatgatcctccaggcagtcttcctagtaaattgtcttggcctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcggatgaacattctatgatcctccaggcagtcttcctagtaaattgtcttggcctga 440
Query: 241 aatgacaatcgtgtcaacatggagacatcttctacattgcgacaggaagtcttgagagta 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aatgacaatcgtgtcaacatggagacatcttctacattgcgacaggaagttttgagagta 500
Query: 301 gaaaatggttctctcatttcagacttcgggaaccagatgacgaccagagctggtgaactg 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gaaaatggttctctcatttcagacttcgggaaccagatgaggaccagagctggtgaactg 560
Query: 361 aaaataataagaagcctccagcaataacacctcctggtcagagatatcgccttattggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaataataagaagcctccagcaataacacctcctggtcagagatatcgccttattggaa 620
Query: 421 ctttgtttccaaacttctgtggggttgttggagatcttgtcaaagaatgggttccccacg 480
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 621 ctttgtttccaaacttctgtgggggtgttggagatcttgtcaaagaatgggt-ccccacg 679
Query: 481 g 481
|
Sbjct: 680 g 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 880
Length adjustment: 10
Effective length of query: 471
Effective length of database: 870
Effective search space: 409770
Effective search space used: 409770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
