BAC Information

Click to search

BAC

Clone NameMSMg01-072P06
Chromosome11 (Build37)
Map Location 31,801,025 - 32,006,389
singlet/doubletdoublet
Overlap geneCpeb4, 4930524B15Rik, Nsg2, LOC669207
Upstream geneLOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
Downstream geneIl9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072P06.T7 (MSMg01no072_p06.b1)MSMg01-072P06.TJ (MSMg01no072_p06.g1)
ACCAG296369AG296370
length720709
length of high quality
(start - end)
215 (67 - 281)300 (76 - 375)
definitionCHROMAT_FILE: MSMg01no072_p06.b1 PHD_FILE: MSMg01no072_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:52 2005CHROMAT_FILE: MSMg01no072_p06.g1 PHD_FILE: MSMg01no072_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,006,175 - 32,006,389)(31,801,025 - 31,801,322)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGATCCGCGG
AATTCAGTGCCTTTCGCCTCATGCTAATGCTTTAGTGAAGCAGGTGGTCG
TTTCTTCACTCACTGCTGTTCTGAGACGGCATCTGGGCAGAACTTCCAGT
TGAGAGGACAGAACAAGACAAGCCTGTGCCCCACTCACAGGCAATGGCGG
CAAAGAGTCTCCATTCTCAGGGGAGAGCAGTGACCCGATGGGTTTTACTC
CACAATTTAAAAATTCCATAAACCATGGCAAACAGCATAATTATGGTGTT
ACTGATGTTCCTGCCGTTTATTTGTGTGATATGCTGACAGGTTTTATCTT
TTGAATCTCCCTGCTATCTATTACTTAGGTCTGGTCTCATTGCCTGTTGG
AACGATGATGAACCTGAATCTAATGCTGCCTGACTTAATTATTATCTACT
ACTACTTCTCCCAACCCCCGAAAAAATAACCAGTTTTCTTCCTGTTGTCT
AACTAGCCTGGCGTTTTCCCTTGTACTGCTCATGACCTGTGATTTTGATA
TCCTTCTCCACACGATTTCATCATGGCATTGCCATTGCCCATTCTCTGAC
TATGGATCATGTATACTGTCTTCTTCCGCTCGGTCTGCGCTTTCAGTCGT
GTTTGGACAATTCCTTATCTTTAACTATAGCCATGTCCTTAGCGTCTCTT
TTCTTCGTCCTCTCGGTCGC
NNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTAATTAGGTCAGCTCCTTGGTAG
CTTCTCTGCAGACATTCCCTTATGCTTGGAACTCTTAGTTGCTTTAGACC
TTGCAACTTTACAGCTGCCTTGAATTAGTTGGGTAGTCTTTCATTCTGTA
AAAATATATTACATTGGCTTTTACAATCTTGCTTTCCACTGTCCTATTAC
AATTTAAAATTGGAATTTGAGGTTTTGGTACAAAAAGAAGGTGCCCTTTG
TTTATATTAATACTCGGAACCTAAGTGAGTTTTGAGGTTTCCCTTTCCTG
AAATCTTTCTGCTGCTGTGCTAGATATGGTAAAAGTTGGGTGCTTGAGTT
TTGCTGTCTCGTTTTTTCTCAAAAAAGACATACACCCCTGTTTGCAACCA
AAGAGACGAGCAAACATCTAATTCCCTGAAGCCCGAAGATTCCGTGTGTT
ATTTTTGCCTTCTCCAAAATTCTAGTTTAGTACTTACTACAGAAAAGAAG
CTGCCTGGTGTCCTTTTCTTCGGAAGGTGGAGCATCATTGCTTATCTTTG
CTTGTTGATGGAACCGGCAAAGGAACCGCTGTTAATCGCCGAGCTACTAC
TAAACACTATGGCTATAGGGTTCTTAATATTCCACTCACGCTATTCTACG
ACTCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_p06.b1 MSMg01no072_p06.b1 CHROMAT_FILE:
MSMg01no072_p06.b1 PHD_FILE: MSMg01no072_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:52 2005
         (215 letters)



>mm_chr11_32005975_32006589
          Length = 615

 Score =  408 bits (211), Expect = e-118
 Identities = 214/215 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcatgctaatgctttagtgaagcaggtggtcgtttcttcactcactgctgttctgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cctcatgctaatgctttagtgaagcaggtggtcgtttcttcactcactgctgttctgaga 356

                                                                       
Query: 61  cggcatctgggcagaacttccagttgagaggacagaacaagacaagcctgtgccccactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cggcatctgggcagaacttccagttgagaggacagaacaagacaagcctgtgccccactc 296

                                                                       
Query: 121 acaggcaatggcggcaaagagtctccattctcaggggagagcagtgacccgatgggtttt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 acaggcaagggcggcaaagagtctccattctcaggggagagcagtgacccgatgggtttt 236

                                              
Query: 181 actccacaatttaaaaattccataaaccatggcaa 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 actccacaatttaaaaattccataaaccatggcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no072_p06.g1 MSMg01no072_p06.g1 CHROMAT_FILE:
MSMg01no072_p06.g1 PHD_FILE: MSMg01no072_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:52 2005
         (300 letters)



>mm_chr11_31800825_31801524
          Length = 700

 Score =  576 bits (298), Expect = e-169
 Identities = 298/298 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaattaggtcagctccttggtagcttctctgcagacattcccttatgcttggaactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaattaggtcagctccttggtagcttctctgcagacattcccttatgcttggaactct 260

                                                                       
Query: 61  tagttgctttagaccttgcaactttacagctgccttgaattagttgggtagtctttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagttgctttagaccttgcaactttacagctgccttgaattagttgggtagtctttcatt 320

                                                                       
Query: 121 ctgtaaaaatatattacattggcttttacaatcttgctttccactgtcctattacaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtaaaaatatattacattggcttttacaatcttgctttccactgtcctattacaattt 380

                                                                       
Query: 181 aaaattggaatttgaggttttggtacaaaaagaaggtgccctttgtttatattaatactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaattggaatttgaggttttggtacaaaaagaaggtgccctttgtttatattaatactc 440

                                                                     
Query: 241 ggaacctaagtgagttttgaggtttccctttcctgaaatctttctgctgctgtgctag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaacctaagtgagttttgaggtttccctttcctgaaatctttctgctgctgtgctag 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)