Query= MSMg01no072_p08.b1 MSMg01no072_p08.b1 CHROMAT_FILE:
MSMg01no072_p08.b1 PHD_FILE: MSMg01no072_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:52 2005
(272 letters)
>mm_chr11_21228576_21229248
Length = 673
Score = 497 bits (257), Expect = e-145
Identities = 266/269 (98%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 5 gaattctttaggtatt-ctgttccaaggagtcgttttctgcctgtgaaaaccacatcaga 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaattctttaggtattaatgttccaaggagtcgttttctgcctgtgaaaaccacatcaga 414
Query: 64 tctcttgcttgtgatgtcaaacctctatagccttaacgcaggatctctgaccatgagtga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tctcttgcttgtgatgtcaaacctctatagccttaacgcaggatctctgaccatgagtga 354
Query: 124 aaagcgtgaattccctacagtgcccttggttaaattaggcagttcttttaccaaggtagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaagcgtgaattccctacagtgcccttggttaaattaggcagttcttttaccaaggtagg 294
Query: 184 taactggaaagatacttggagaattattttccactactgactttgtatggctccatctgt 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 293 taactggaaagatacttggagaattatgttccactactgactttgtatggctccatctgt 234
Query: 244 ggtgtggtttgaaggaactgactgcagtc 272
|||||||||||||||||||||||||||||
Sbjct: 233 ggtgtggtttgaaggaactgactgcagtc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 673
Length adjustment: 9
Effective length of query: 263
Effective length of database: 664
Effective search space: 174632
Effective search space used: 174632
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no072_p08.g1 MSMg01no072_p08.g1 CHROMAT_FILE:
MSMg01no072_p08.g1 PHD_FILE: MSMg01no072_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:53 2005
(498 letters)
>mm_chr11_21020908_21021806
Length = 899
Score = 864 bits (447), Expect = 0.0
Identities = 488/505 (96%), Gaps = 9/505 (1%)
Strand = Plus / Plus
Query: 1 aactaaagttttcttcttgttctttttaaatgaagttgattaagatattttgaaaatacc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 197 aactaaagttttcttcttgttctttttaaatgaagttgattaagacattttgaaaatacc 256
Query: 61 aaaaaagttaacctctgtaagagtagtaaaaacatgtctaaactcatctgattttcctct 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 257 aaaaaagttaacctctgtaagagtagtaaaaacatgtccaaactcatctgattttcctct 316
Query: 121 ttaaaaaataataaataaaaataaaattatatatatgtatacatacacacata--tgtgt 178
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 317 ttaaaaaataataaataaaaataaaattatatatatgtatac--acacacatatgtgtgt 374
Query: 179 atatata----tatatatacacacacacatttgatgttaaaattaattgtagtacattct 234
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atatatatatgtatatatacacacacacatttgatgttaaaattaattgtagtacattct 434
Query: 235 gagatttttaaaaattatatcttagttattagcactgatgagataaatattagtataggt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gagatttttaaaaattatatcttagttattagcactgatgagataaatattagtataggt 494
Query: 295 accaagaaacacagttaaatctgagaaatggttaggtcggaagtgatgaggcaactctac 354
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 495 accaagaaacacagttaaatctgagaaatggttaggccgtaagtgatgaggcaactctac 554
Query: 355 cataacagcaaagtgtttattaatcactactttgggttcttaattaaatacttagtaggc 414
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 555 cataacagcaaagtgtttattaatcactactttgtgttcttaattaaatacttagtaggc 614
Query: 415 atttaataagtacttgatttttttt-acattgcattatcattggaaatcattgtttgaac 473
||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct: 615 atttaataagtacttgatttttttttacgttgcattatcattggaaatcattgttttaac 674
Query: 474 tcttacagccgaaaaacatttattt 498
|||||||| ||||||||||||||||
Sbjct: 675 tcttacagtcgaaaaacatttattt 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space: 433832
Effective search space used: 433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
