BAC Information

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BAC

Clone NameMSMg01-072P16
Chromosome11 (Build37)
Map Location 106,576,490 - 106,577,110
singlet/doubletsinglet
Overlap genePecam1
Upstream geneTanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2
Downstream geneGm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072P16.T7 (MSMg01no072_p16.b1)MSMg01-072P16.TJ (MSMg01no072_p16.g1)
ACCAG296389AG296390
length717724
length of high quality
(start - end)		609 (66 - 674)561 (74 - 634)
definitionCHROMAT_FILE: MSMg01no072_p16.b1 PHD_FILE: MSMg01no072_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:54 2005CHROMAT_FILE: MSMg01no072_p16.g1 PHD_FILE: MSMg01no072_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTAAACGACTCCTATATCCAGAAATCCGCGGAATTCTC
TTGCCTGTCCAGACCAGAAGCCTGCTGTGTGAAAAGCAGAAACAACTCTG
ACAACCTCTCCAGGCGCGCAGAGACCGGCTCTGGTACTTGTCAGGTAATG
GCGGCCATAGCTGGAAACCAAGAACAATGAGGTCTGGGCTGGCCTGATAT
CTCCTCAGGAAATGACTGGCCTTCCGGAGGGACCACTGAACCCAATGGCT
TTGTCTAGAAGAGGAGAAAACAACAACAACAACCAAAAAAACCCACAAGT
GGCATTTGCCTCAAAGTTCTTGCGCTTCTAGCCTCATCTGGGTTTGGGGA
CTTCTCCTGACAGGACAAGGAGGTTTTATTTCCACTCAAAAGTGCTTTTG
TGGGATACCTAGCAAGACCTGTTTGCCTTTCCTGTGGGCTCCCTATGGGG
GCTGTATCCATAGAGTGTAAATCTGGGTCTCCTATCCTGCACTGGCCAGC
TTCTCTGACAATATGCAGTCCTTGTGAGGAACGCTACTGGTGGCTCAGTA
GAAAGAGGGATTTTCTTAAGCCGCTGCAGTGGTCCCTGATCACCGGCTTA
GTCACCAAAGGAGCCCCTTTGGCTGTTTGTGTATGTGTGTTTGTGTGTGT
GTGACTGTGTATGTATGTATGCATGCGNGCTCTCCCCNTCCCTTTTTTTA
CCCTTTTCCCTTTTCCC

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGTTACACAGAGAAA
CCATGTCTTAAAAAAGAAAAAGAAAATCTCTCCAACTCTAATTTATTTAA
TTATGTGTTTAGGTGTGTCTGTGCACATGAGTGTAGTGCCTGCAGATGCC
AGAAGAGGGCGATGGATCCTTTGGAAACAATGTTATTGGCAGCTTGAGTT
GTGGGATGTAGACTCTGGACTCAAACTCCCATCCTTTGGAAGAGTAGTGT
CTGCTCTTTTTTTTTTTTTTTTTTTTTAGATTTATTTATTATTATACATA
AATACACTGTAGCTGTCTTCAGATGCGCCAGAAGAGGGCATCAGGTCTTA
TTATGGTTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGA
CCTTGATGGAAGAACAGTCCGTGCTCTTACCCACAGAGCCATCTCACCAG
CCCTAGTGTCTGCTCTTAACTGCTGAACCACCTCCTCGGCCCCAAGATAA
TTGTGTTGGGAAGGGAGAAGGTGGAAGGCCACAAAACCTAAGTATGTTTT
AACTCTTATCAAGCCTGGCTACTTGGATAACAAGATTAGTGCCCAAATTA
GCCAAAGAAATAGTGTCCAGATATGTAAAATACACTCACTATAGGTGACC
AGGTTAAATCTTTTTTGATTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_p16.b1 MSMg01no072_p16.b1 CHROMAT_FILE:
MSMg01no072_p16.b1 PHD_FILE: MSMg01no072_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:54 2005
         (609 letters)



>mm_chr11_106576290_106577301
          Length = 1012

 Score = 1104 bits (571), Expect = 0.0
 Identities = 602/621 (96%), Gaps = 15/621 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagcctgctgtgtgaaaagcagaaacaactctgacaacctctccaggcgcgcagagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagcctgctgtgtgaaaagcagaaacaactctgacaacctctccaggcgcgcagagac 260

                                                                       
Query: 61  cggctctggtacttgtcaggtaatggcggccatagctggaaaccaagaacaatgaggtct 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctctggtacttgtcaggtaatggcggccatagctggaaaccaagaacaatgaggtct 320

                                                                       
Query: 121 gggctggcctgatatctcctcaggaaatgactggccttccggagggaccactgaacccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggctggcctgatatctcctcaggaaatgactggccttccggagggaccactgaacccaa 380

                                                                       
Query: 181 tggctttgtctagaagaggagaaaacaacaacaacaaccaaaaaaacccacaagtggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tggctttgtctagaagaggagaaaacaacaacaacaaccaaaaaaacccacaagtagcat 440

                                                                       
Query: 241 ttgcctcaaagttcttgcgcttctagcctcatctgggtttggggacttct---cctgaca 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 441 ttgcctcaaagttcttgcgcttctagcctcatctgggtttggggacttcttctcctgaca 500

                                                                       
Query: 298 ggacaaggaggttttatttccactcaaaagtgcttttgtgggatacctagcaagacctgt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggacaaggaggttttatttccactcaaaagtgcttttgtgggatacctagcaagacctgt 560

                                                                       
Query: 358 ttgcctttcctgtgggctccctatgggggctgtatccatagagtgtaaatctgggtctcc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 ttgcctttcctgtgggctccctatgggggctgtatccatagagtgtaaatctgggcctcc 620

                                                                       
Query: 418 tatcctgcactggccagcttctctgacaatatgcagtccttgtgaggaacgctactggtg 477
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatcctgcactggccagcttctccgacaatatgcagtccttgtgaggaacgctactggtg 680

                                                                       
Query: 478 gctcagtagaaagagggattttcttaagccgctgcagtggtccctgatcaccggcttagt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctcagtagaaagagggattttcttaagccgctgcagtggtccctgatcaccggcttagt 740

                                                                       
Query: 538 caccaaaggagcccctttggctgtttgtgtatgtgtgtttgtgtgtgtgt---------- 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 741 caccaaaggagcccctttggctgtttgtgtatgtgtgtttgtgtgtgtgtttgtgtgtgt 800

                                
Query: 588 --gactgtgtatgtatgtatg 606
             |||||||||||||||||||
Sbjct: 801 gtgactgtgtatgtatgtatg 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1012
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1002
Effective search space:   600198
Effective search space used:   600198
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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