Query= MSMg01no073_a21.b1 MSMg01no073_a21.b1 CHROMAT_FILE:
MSMg01no073_a21.b1 PHD_FILE: MSMg01no073_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:00 2005
(315 letters)
>mm_chr11_48917038_48917753
Length = 716
Score = 478 bits (247), Expect = e-139
Identities = 286/313 (91%), Gaps = 24/313 (7%)
Strand = Plus / Minus
Query: 4 ggaattccagaggtgctggcatac-caacataactaaattaggttaaaccctgttaggga 62
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 374 ggaattccagaggtgctggcatacacaacataactaaattaggttaaaccccgttaggga 315
Query: 63 acattgccacccatgcacagtgacagtgacaagtgctggtgtcaggtgggaagtggcagc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acattgccacccatgcacagtgacagtgacaagtgctggtgtcaggtgggaagtggcagc 255
Query: 123 tgtgaaggagttgggaatgggaatattttagaggggtcggcaggagcttctgacggacgg 182
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 254 tgtgaaggagttgggaatgggaatgttttagaagggtcggcaggagcttctgacggacgg 195
Query: 183 atgggcggagggagggacggacggacggacagacggaatgaccaagttatcgaaagctag 242
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 a----------------cggacggacggacagacggaatgaccaagttatcgaaagctag 151
Query: 243 cccttgaaagtaactccagtgcagtaacctgcaaccagacagacctgtcacttactgatg 302
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 150 cccttgaaagtaactccagtgcagtaacc-------agacagacctgtcacttactgatg 98
Query: 303 tgggaaatggggt 315
|||||||||||||
Sbjct: 97 tgggaaatggggt 85
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space: 216342
Effective search space used: 216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_a21.g1 MSMg01no073_a21.g1 CHROMAT_FILE:
MSMg01no073_a21.g1 PHD_FILE: MSMg01no073_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:00 2005
(559 letters)
>mm_chr11_48893366_48894324
Length = 959
Score = 371 bits (192), Expect = e-107
Identities = 308/356 (86%), Gaps = 26/356 (7%)
Strand = Plus / Plus
Query: 4 gatgattatcaatatgatcaaggaaaagggactcagtcagctgaatgacaatcaggggtt 63
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 197 gatgattatcaatatgatcaaggaaaaaggactcagtcagatgaatgacaatcaggggtc 256
Query: 64 gacaaa-ggctatgatgatggaagtgaacaaaaagagatactgaagaaaatct-tgtctt 121
||||| ||| ||||| ||||||||||| ||||||| ||||||||| ||| || ||||||
Sbjct: 257 aacaaagggc-atgataatggaagtgaataaaaagaaatactgaag-aaacctgtgtctt 314
Query: 122 aaaagaagctaaaaatattttttttttttgtaaatcacatactcaatggaaaggcacat- 180
| | || |||||| ||| ||||||||||||||||| || |||| |||||||||||||
Sbjct: 315 atatgaggctaaa---attatttttttttgtaaatcaaatgctcattggaaaggcacatt 371
Query: 181 ---------gagcacctgaaggagagattatctggaa-ttttaggtatatatagaaaata 230
|| |||||||| |||||||||||| ||| ||||||||||||||||| ||||
Sbjct: 372 aacacaatggatcacctgaaagagagattatct-gaagttttaggtatatatagataata 430
Query: 231 tagtattggaagacttgttcatggttggccataataattgaaaaacctatgaataaagca 290
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct: 431 tagtattggaagacttgttcaagtttggccataataattgaaaaacctatgaataaacca 490
Query: 291 tgtgtaatatttggaacaccagaaaatgtatgtgcatagaagaagaactcctttcc 346
|||||||| |||||||||||||||||| | | | |||||||||||||||||||
Sbjct: 491 tgtgtaatctttggaacaccagaaaat--a-g---a-agaagaagaactcctttcc 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
