BAC Information

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BAC

Clone NameMSMg01-073B24
Chromosome11 (Build37)
Map Location 46,852,925 - 46,853,285
singlet/doubletsinglet
Overlap geneSgcd
Upstream geneLOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4
Downstream geneLOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073B24.T7 (MSMg01no073_b24.b1)MSMg01-073B24.TJ (MSMg01no073_b24.g1)
ACCAG296501AG296502
length709815
length of high quality
(start - end)
464 (35 - 498)34 (234 - 267)
definitionCHROMAT_FILE: MSMg01no073_b24.b1 PHD_FILE: MSMg01no073_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:06 2005CHROMAT_FILE: MSMg01no073_b24.g1 PHD_FILE: MSMg01no073_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTATACGACTCCTATATGCAGAGATCCGCGGAATTCTTTC
TGGTTCCTGGTTGGATCTTTATGGAAAGAGACTCAAATGAGAAAGAAAGT
ACCAAAGCAGAGCACTGGCAAATACGTGAAAAAAAAATTCTGTTCTAGCA
CACTGAGCCCTTCAGATATTCAGGCTGAAGTAAATCACATAGCCCTCTGA
GGAGGAAATGGGGGTGGGCTAAAGGCGGGATGTGAGGGAGGAACAAGGAG
GAAAGGAAGGAGGGGGATTTCAATCACAATATGGATATAAAGTGAATGAA
TTAATAAATTAATAAATTATTAAATAAATAAACAAATAAAATAAATTTTG
AAGGAAAGAAAGTACAGTTAACAAAAACAGTCCTTTGCCCAAGCATTAAC
ATCAGGACTCAAATGAAGGTCATCAGACCCCCAATGTCCAGATTTCGTTC
TACCTGTAATACATTCTCCTAGCCCAGGACAGCCAAAACCTAAATCTGGC
TACAAAGGTCACAGGAAAATAAGCAATGCAAAGCATCCCTGTGGCACACT
ATAAGTCTACCGAAGACACCAGCTTACTGAGAACAGGACGACTGTGCCTC
GTTGTAAAGCTTTTCCATGCGGTCCTTGGTCTTAGCTTCCAGACGCTTAT
GCGCTCGACCACATCATAACACTTCGTTTATTACGATGGATTCTGGGCGC
CGGAGAATG
NTTTCTTTNNNTTCNNNTTCCCCTTCTTTCTTCTCTTTTTTCCTGTTTCN
NNTACACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAGACATGAAAGATGG
CAAGTGGGAGTGATCTCCAGCCATCCAGAGAGAATTCGCCTGAGTGGAGT
GGGTTGGTGCATGACACAATAGAGCTGACGGCACCCGGTGCTTTGTAGAG
GTAGGCCCTGCCCACTGGCATTTACCTTTACCTCTTGTTTCAGCTATGAA
GAAAACTTTATCTGGGGAACCAAGAATTTCTATAAAATACTCCGCGTGAG
ATCCTCCTTCCTCACTAACCCGACGCAGAAATACATTCCACTGTATTCAA
CAGCCAACCCGCCCCGATTTTTTTGTTCCCGCCCCCCCCCGCCCTCTTTA
TCTATGTGAGTTTCTTCTGCTACACTTTCTACCCAAAAAAATACTTCTAT
TCTCTGCCCTGCATTCCGATCCACGTTTCACATTAACCGTGGACCGATCC
AAGCTTTCCCTGCCGTCCATTTCCTTTCCACCCTTCCTTGTTCTCTGCGC
CCCCCCTGTTTTTACACCATTGTCCACTCCCTTCTCCCTTTTCCGTCGCT
TTTCCTTTGGCGATTAACAACACCTTTTCTTTCCCTCCACCGTTTTCCAT
CGCTCGTTCCTTTCCCTTTCATCACCCGTTCCCTTTGCTCTCCCTGTTCC
TCCCTCTCTCCCCGTTCTCTTTTTGTATCCCTCCCTTTCTTTTCCCCTCT
CTTTCCGCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_b24.b1 MSMg01no073_b24.b1 CHROMAT_FILE:
MSMg01no073_b24.b1 PHD_FILE: MSMg01no073_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:06 2005
         (464 letters)



>mm_chr11_46852925_46853789
          Length = 865

 Score =  615 bits (318), Expect = e-180
 Identities = 351/364 (96%), Gaps = 7/364 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattctttctgg---ttcctggttggatctttatggaaagag-actcaaatgagaaag 61
           ||||||||||||||     | ||||||||||||||||||||||| | |||||||||||||
Sbjct: 361 ggaattctttctggaaa--catggttggatctttatggaaagagtattcaaatgagaaag 304

                                                                       
Query: 62  aaagtaccaaagcagagcactggcaaatacgtgaaaaaaaaattctgttctagcacactg 121
           |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 303 aaagtaccaaagcagagcactggcaaatacatg-aaaaaaaattctgttctagcacactg 245

                                                                       
Query: 122 agcccttcagatattcaggctgaagtaaatcacatagccctctgaggaggaaatgggggt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agcccttcagatattcaggctgaagtaaatcacatagccctctgaggaggaaatgggggt 185

                                                                       
Query: 182 gggctaaaggcgggatgtgagggaggaacaaggaggaaaggaaggagggggatttcaatc 241
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gggctagaggcgggatgtgagggaggaacaaggaggaaaggaaggagggggatttcaatc 125

                                                                       
Query: 242 acaatatggatataaagtgaatgaattaataaattaataaattattaaataaataaacaa 301
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 acaatatggatgtaaagtgaatgaattaataaattaataaattattaaataaataaacaa 65

                                                                       
Query: 302 ataaaataaattttgaaggaaagaaagtacagttaacaaaaacagtcctttgcccaagca 361
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 64  ataaaataaattttgaaggaaagaaagtacagttaagaaaaacagtcctttgcccaagca 5

               
Query: 362 ttaa 365
           ||||
Sbjct: 4   ttaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 865
Length adjustment: 10
Effective length of query: 454
Effective length of database: 855
Effective search space:   388170
Effective search space used:   388170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)