BAC Information

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BAC

Clone NameMSMg01-073E15
Chromosome11 (Build37)
Map Location 18,520,023 - 18,520,287
singlet/doubletsinglet
Overlap genenone
Upstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796
Downstream geneMeis1, LOC635455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073E15.T7 (MSMg01no073_e15.b1)MSMg01-073E15.TJ (MSMg01no073_e15.g1)
ACCAG296624AG296625
length690734
length of high quality
(start - end)
273 (42 - 314)559 (71 - 629)
definitionCHROMAT_FILE: MSMg01no073_e15.b1 PHD_FILE: MSMg01no073_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:18 2005CHROMAT_FILE: MSMg01no073_e15.g1 PHD_FILE: MSMg01no073_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTGTCCCATTATGAGGAGACAAGTGCAGACATGAAGAGGGGGAGCACC
ATATGACCACACAGCAGAGACTAGAACCACACAGAAGCAAGGCTGATGGC
AGTTAACATCAAAAGGTGGTTGGCTCCCCAGTTTGTGTTAGAAAGGGAAG
AGAATCATATAATCCTCTTGCTTTGTATCTTATGGACCCTAGAGCTTTGA
CACAATAATTNTTTTGTCTTAGACTCCAGTTTGTAGTAATTTTGTAATGA
TGGTCTACTAACTTATCGAAATTTATTATTAATTTGGCCCTTAATAGGGG
GGACTCTTTTACCCCGGCCCTAATATAATTTTTTTTTTTTTTTGTCCCCC
CCTCCCCCCCCTAAATTTTTAAAAAATTTCTTTCCCAAAAGATATTTGGG
GGGCATAAATTTTCTCTCCCCCCCCCCCCCCAGTTTTAAAAAAGAAATAA
AAAAAAACCCCCCCTCCTTCTTTTTGGGGGGGGGGGGTGGTGTGTTTCTT
TTTATTTATTCTTTTTCTTTTTCAAACTTTACTTCTAAATTCTTATTTCT
TTTTTCTTCTATCTCCTTTCCCTTTCCTTCCCTTACTTTCTATTATATAA
CTTTAACCGTAATGCTTCCTTTTCTCTTCTCGTTCCTCGG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGTTTAGCCCTGTACTCCATTTTTAAAT
TGGGTTATTAAGTTTTCTTGAAGTCTAACTTCATGACTTCTTTATATATT
TTAAATATTAGCCCTCTGTCAGATGTAGAGTTAATGAAGATCTCGTCCCA
AGACTGTGTCCTTTGCTTTTTAATTTAAAGAGGTACCATTTTTCAGTTGT
TGATTTTAGAGTCTGAGCCATTGGTGTTCTATTCAGGAAAATTTCTCCTG
TGCCAATACATTCAAGGCGATTTCCCTACTTTCTCTTCTATTAGATTCAA
TGTTGAGGTTCTTCATTCACTTGAACTTGAGCTTTGTGCAGGGTGATAAA
TATGGATCAATTTGTATTCTTCTACATGCAGACCACCAGTTAGACCAGCA
CTGTTTGTTGAAGAATCTTTCTATTGTTCCAATTGCTTCTTAGTCAAAAA
TCAAGAGTCCATAGGTGTGTGGATTTATTTCTGGGTGTTCAATTCTGTTC
CATTGATCAAGCTGTCTGTTTCCATACCAATACCAGGCAGGTTTTAAAAA
TACTTATTACTCTGTGGTAGAGCTTGAAGTCAGGGATGGTGATTTCTCCA
GAAGGTTTTTTTATTGTTCAGAATTGTTCTGGTTATCCTGGGTTTTTTTT
TTTTTGTTTTGGTTTGCTTTTGATTTTGTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_e15.b1 MSMg01no073_e15.b1 CHROMAT_FILE:
MSMg01no073_e15.b1 PHD_FILE: MSMg01no073_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:18 2005
         (273 letters)



>mm_chr11_18519819_18520488
          Length = 670

 Score =  495 bits (256), Expect = e-144
 Identities = 265/268 (98%), Gaps = 3/268 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgtcccattatgaggagacaagtgcagacatgaagagggggagcaccatatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaattcactgtcccattatgaggagacaagtgcagacatgaagagggggagcaccatatg 410

                                                                       
Query: 65  accacacagcagagactagaaccacacagaagcaaggctgatggcagttaacatcaaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 accacacagcagagactagaaccacacagaagcaaggctgatggcagttaacatcaaaag 350

                                                                       
Query: 125 gtggttggctccccagtttgtgttagaaagggaagagaatcatataatcctcttgctttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtggttggctccccagtttgtgttagaaagggaagagaatcatataatcctcttgctttg 290

                                                                       
Query: 185 tatcttatggaccctagagctttgacacaataattnttttgtcttagactccagtttgta 244
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 289 tatcttatggaccctagagctttgacacaataatt-ttttgtcttagactccagtttgta 231

                                       
Query: 245 gtaattttgtaatgatggtctactaact 272
           ||| |||||||||||||| |||||||||
Sbjct: 230 gta-ttttgtaatgatgg-ctactaact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 670
Length adjustment: 9
Effective length of query: 264
Effective length of database: 661
Effective search space:   174504
Effective search space used:   174504
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)