BAC Information

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BAC

Clone NameMSMg01-073F12
Chromosome11 (Build37)
Map Location 70,026,650 - 70,026,782
singlet/doubletsinglet
Overlap genenone
Upstream geneGucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1
Downstream geneSlc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073F12.T7 (MSMg01no073_f12.b1)MSMg01-073F12.TJ (MSMg01no073_f12.g1)
ACCAG296666AG296667
length720790
length of high quality
(start - end)		33 (237 - 269)144 (137 - 280)
definitionCHROMAT_FILE: MSMg01no073_f12.b1 PHD_FILE: MSMg01no073_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:22 2005CHROMAT_FILE: MSMg01no073_f12.g1 PHD_FILE: MSMg01no073_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTCTATGCCCTAAAGGTTGAAAGGATGAGTTTCAGAGGTCTTGGATG
GGGTGGGTTGTCGTGCACCACATCTGTAGTCCCAGAGGGTATCATAAATG
ATATCGTTTGCTGTGTGCTCCAACTATGAAAGAAGCTGTAATGCAGCCTG
CCAGGAAGGAGGTAAAAATGCTGAGAGGGGCTCTAGCCCTCACATCTGTG
TCTCTCTCCCTCTTGACAGAGAGATCAATATGCGGATCTCATAGTATCTA
GCCCGGAAAGTCTTCTTCTGTTCCACTAATCTGTATCAGGAGTTCACGCA
GTGTTTTTTTTGTTTCATCCTCCTCCTTCTCTTTATTTCCGTACTAAGGT
CGCGTTTGTCACTCGATGGATTTGCATTACTGCTTTTGCTTGGCGTCGCC
TTTATCTTCCCTGCCTTTGTTCCCCTTCACCTCCGTCCCCTGCTTTTTCC
TTTTTCTTTTGCTTTCCTTCCTCTCTTCCACTTGTTTTCTTTTCTCCCCC
GTTCTTGTATATCCTATTTCCCCTCTGCTCTTCTCCCCTACCTCTATTAT
CGCCTTTTTTTTTTCCACCCCTTCCACTTTTTTTTCTGCTCTTCCTTTTC
TCCCCTTCTTCCTCCACCCTTTCCCTTCATCCTCAACTTTTCTTACTCCC
CTAATTTTACCCCTTTTTTT

TTCCTTTCCTCTCTTCCCCCCTTCTTTCTTCCTTTTTTTCTCTTTTCCNN
TNCTCTCGAATGATATGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAATAAACCCAGGTGTTT
TTCTTGAAGATTTTAACGAGCAACCTTCTTTAGCAGTCACTATTGCTTTA
CTTCCGCCATTTGATTCATTTGGTTTAATCATTAACCAATGCCATTGAAA
TTTCAGCGATTTGCAGGTTATATCAATCCGTAGCCACGGCATGGCGTTGT
TTCCTAATTGATGACATAGTATCAGCCTACAACGGGAAGAATCTCAGCTG
ACAAGTCTCGCAACTGGAATATTCTTGATAGCATACTGACCTTCTGAATC
ACACTCACTTTTTTTGTTTCACCGCCCCCCCCCCCTTATTGTAGAGCTAG
TCTATCTTCTTATCCCATTTCCCCATAACAAAAAATTATCGTCCTCCCTC
TTCTTTACTTTTACCCTTTTCTCAGTCCCGGCTCCTCACATTACTTGCTT
TCCTCTGCTGACCTTGTCCCATATCATTATTCCCCCGCAACTTGCCGATT
ACCTGTTTTTTCATTCCTAATGCATTTCGTCCTTTTTCGTTTCCATCATG
CATCCCTAGTTTGTCTCGTTCTCCCCTTTCCTCCCCGCTTTCCTTCCTGT
TCTTCCCCCTTTCATTCCCTACTCTTTCCATCCACTCTGCCCTTTTCTTT
TTTCTCCACCCCTTTCTTTACCCTCTCCTTTCCCTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_f12.g1 MSMg01no073_f12.g1 CHROMAT_FILE:
MSMg01no073_f12.g1 PHD_FILE: MSMg01no073_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:22 2005
         (144 letters)



>mm_chr11_70026450_70026993
          Length = 544

 Score =  250 bits (129), Expect = 4e-71
 Identities = 132/133 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacccaggtgtttttcttgaagattttaacgagcaaccttctttagcagtcactattgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaacccaggtgtttttcttgaagattttaacgagcaaccttctttagcagtcactattgc 274

                                                                       
Query: 61  tttacttccgccatttgattcatttggtttaatcattaaccaatgccattgaaatttcag 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 273 tttacttccgccatttgattcatttggtttaatcattaaacaatgccattgaaatttcag 214

                        
Query: 121 cgatttgcaggtt 133
           |||||||||||||
Sbjct: 213 cgatttgcaggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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