BAC Information

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BAC

Clone NameMSMg01-073H20
Chromosome11 (Build37)
Map Location 115,960,379 - 116,132,795
singlet/doubletdoublet
Overlap geneTrim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68
Upstream geneCd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2
Downstream geneGalr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073H20.T7 (MSMg01no073_h20.b1)MSMg01-073H20.TJ (MSMg01no073_h20.g1)
ACCAG296777AG296778
length711700
length of high quality
(start - end)		329 (64 - 392)247 (55 - 301)
definitionCHROMAT_FILE: MSMg01no073_h20.b1 PHD_FILE: MSMg01no073_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:34 2005CHROMAT_FILE: MSMg01no073_h20.g1 PHD_FILE: MSMg01no073_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,132,467 - 116,132,795)(115,960,379 - 115,960,624)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGTCTCTGACAGCTGAAAGCTCTCATCTGGCCCCTGCCTGCACTCCATGT
ATGTAGTGTACAGACATACATTCAGTCAAACACTCACACACATAAAGAAT
AAAAATAATTTCTTCATGGTGTGAGTGCTTGCTGAGGTCTGTTTGTCTTT
GATTAAGGAGCCAGGGATATTCTTCCTGTAAGGTCACTCTCCTCTAAGTA
TTTTATAAGAAGGAACTCTGAAATCCCGTGAATGTGCATTCTTGTTAGGC
TCTTAGTATATTCATGTACATTGTGTAGTGTCCAGTTGATTTTATGACAT
CAGCTAATATTATTTTGATGCTTAAATTGACTCAGGCTTGGTCTGCAGAA
ACCCTTTCAGGTGGCCTCTTTGACACAACTGACCCCAGTCTCCCCTTACT
TAGCTAGGTATCCTGCAGTCACTTTTTTCATATACTACAATGCGAATGTG
CCCTTTTTGAATGCAACTTTATTTTTCTGGGCATAGAGTCCTTTTCACTG
CGCTTGGAAGAACTTTATTGCTGAGCTACTTCCCACCTCCGGTCTGTTGC
ATCTGTTTTATTATCGCAGTCTGGTTTATTAGTGCAGACTTGGATCTGCG
TTGGCATGTCGGTTTTCAATCTTGCTCTCATTGATTGCCAACATATTTTT
GTACTGTTGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTGCAGCAGGACCTTTCTTACAGAACCTCCCACCAGGGCCGAGAAG
GCCCCTGTGCCCAGTGCTGGTGCATCTCTGCTGCTGATCCGGGTACAGCA
CATGCAGGGGCTGGGAAAACAGAGTCAGGGTTCCAGAGCTGCTAGGGAAC
TGGACCTGCCCTGGTGAGGATCTGGGAGGCTGCGAGCAGACCGGAAGCAG
TGCACTTTCCCAGAGCTCCAGCCCTCCAGCAGCCTTGGAGACAGGAAAAC
GAATAAACTTTCCAAGAAGAGAACCTTAGACACAGTTCCTCTTTTTTCAC
ACCCCCCCCCCCAGATCATGATGGAGACCAACAAGCCAAGGATTGTCACT
GCCAAATAAAGTCAGCAAGTCGTCTACCAGATGTGGATCATTCCTTCCTT
GTACCAGGGAGGTGGGACAGTGGACACATAGAGGAGCTCTTGCTTTCCCA
CAGAGAGTCTCAAAGAAACAGCCCTGGTGCGTAAATTGTGTGAAGTGTTG
CCAACTCCTCCGTACCACAGAGGGAGAACACGTGACCCCCTCAACAATAT
GTCCGACGTTAATTCCCTTATCTCTTTGCCTACAGGTGTCTTTTCTGCCT
TCCTCCCCTGTTGCTGTGCCACCGCTCTCTGCACTGACCTTCCCTATCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_h20.b1 MSMg01no073_h20.b1 CHROMAT_FILE:
MSMg01no073_h20.b1 PHD_FILE: MSMg01no073_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:34 2005
         (329 letters)



>mm_chr11_116132172_116132900
          Length = 729

 Score =  629 bits (325), Expect = 0.0
 Identities = 328/329 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaagctctcatctggcccctgcctgcactccatgtatgtagtgtacagacatacattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgaaagctctcatctggcccctgcctgcactccatgtatgtagtgtacagacatacattc 565

                                                                       
Query: 61  agtcaaacactcacacacataaagaataaaaataatttcttcatggtgtgagtgcttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtcaaacactcacacacataaagaataaaaataatttcttcatggtgtgagtgcttgct 505

                                                                       
Query: 121 gaggtctgtttgtctttgattaaggagccagggatattcttcctgtaaggtcactctcct 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 gaggtctgtttgtctttgattaaggagccagggatattctccctgtaaggtcactctcct 445

                                                                       
Query: 181 ctaagtattttataagaaggaactctgaaatcccgtgaatgtgcattcttgttaggctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctaagtattttataagaaggaactctgaaatcccgtgaatgtgcattcttgttaggctct 385

                                                                       
Query: 241 tagtatattcatgtacattgtgtagtgtccagttgattttatgacatcagctaatattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagtatattcatgtacattgtgtagtgtccagttgattttatgacatcagctaatattat 325

                                        
Query: 301 tttgatgcttaaattgactcaggcttggt 329
           |||||||||||||||||||||||||||||
Sbjct: 324 tttgatgcttaaattgactcaggcttggt 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no073_h20.g1 MSMg01no073_h20.g1 CHROMAT_FILE:
MSMg01no073_h20.g1 PHD_FILE: MSMg01no073_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:34 2005
         (247 letters)



>mm_chr11_115960179_115960825
          Length = 647

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcagcaggacctttcttacagaacctcccaccagggccgagaaggcccctgtgcccag 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcagcaggacctttcttacagaaccccccaccagggccgagaaggcccctgtgcccag 260

                                                                       
Query: 61  tgctggtgcatctctgctgctgatccgggtacagcacatgcaggggctgggaaaacagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctggtgcatctctgctgctgatccgggtacagcacatgcaggggctgggaaaacagag 320

                                                                       
Query: 121 tcagggttccagagctgctagggaactggacctgccctggtgaggatctgggaggctgcg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tcagggttccagagctgctagggaactggacctgccctggtgaggatctgggaggcagcg 380

                                                                       
Query: 181 agcagaccggaagcagtgcactttcccagagctccagccctccagcagccttggagacag 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 agcagaccggaagcagtgcactttcccagagctccagcgctccagcagccttggagacag 440

                 
Query: 241 gaaaac 246
           ||||||
Sbjct: 441 gaaaac 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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