BAC Information

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BAC

Clone NameMSMg01-073O14
Chromosome11 (Build37)
Map Location 3,067,080 - 3,067,536
singlet/doubletsinglet
Overlap geneSfi1
Upstream geneLOC236604, LOC623257
Downstream geneEif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073O14.T7 (MSMg01no073_o14.b1)MSMg01-073O14.TJ (MSMg01no073_o14.g1)
ACCAG297094AG297095
length706712
length of high quality
(start - end)
486 (72 - 557)282 (74 - 355)
definitionCHROMAT_FILE: MSMg01no073_o14.b1 PHD_FILE: MSMg01no073_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:07 2005CHROMAT_FILE: MSMg01no073_o14.g1 PHD_FILE: MSMg01no073_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAAATCCGCGGAAT
TCAATTCTATGCCTTCTAAATGCATTTGTTGTTCCTTCTGCATGGCCCTT
GACACAAAGTCTACTTTGAATCTCTTGATACATGTAACAAAACCTTTTTA
TAACTGGTTCTGTGCTTATGCCCCTTGTGGTTCTCTGGGTTCTGACTGTC
AGTACTACACAAGCCCAGGAGAGTACAGCCTGCTGCTTTACAGCTATACT
TACTTAGATCTGAATCCATGATCCAGCGTGTGTCATTGGGCTATTTTGCG
TCTCTGTACTGGGGGCCTCATGCCTGCATAGCAAACACATTATCATCTGA
GCCATCTCCCCAGCCTAAGAAATTATTCAAGTAAAAATAAGTTATTTAAA
GTGTATTTAGGTACTGTTTTAAAATGTTTAATTAGTGTGCAGTTTTATCT
GAGTCGGTTTTTGTATTGTGAATTCATTAACTCTATTTTTATTGAGGAAT
TAATGTTCTGGTACTGTTAAACACTATGTTCATAATTTCTAAGTGCTTCT
TAAAGAGAAGAAGAACACTAATATCTGTAGATGCGCAAGGGAGCACTGTT
CTAGGAAGGAAAGGTCTTTGTGGTTAGTGACAAAACCAAGCAAGCTGTTT
CTGTTTATTTGTTTTCTTTTGTTTGTTTCTTTTAGTGCTTATAGATGACT
GACTTA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAGTCG
TGTTGTGGGAACACTTCATTACCACCATTCCCCAGCTGAAGAGTTCTGAA
TTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTATG
ACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCGCCGG
TGATGGTAACCGTCCCAGGTTTTCTTGTCCCGGGTTATCTCGTCCCAGGT
CTTCTCGTCCCGGGTTTCGGCACAAACTCTTACACGCATTCACGAAACTG
GCCAGGAAGAATGCAACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTG
CTTACATCTTCAGGAGCCTGATCAAGAGTGCATGAGTGCTAGAAAAATAA
CAAGATCAAGATCGTCCGAGAGAGAATGAAATGCTAGAAAATGATCAAGA
TCAAGAAAGCACGAGAAAGAATGGTAAAACCCTGTCCCTTTTAAGGAGAA
TTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCGG
CCCAATTGTCATCTTGTGAAAGGCATAACACCTGGTTGGGAAATCTGCCC
CTGCTTGTGTGTAGACTATGCTTACCACTTACAACACAGCTGTCAGCGCC
ATTTTATAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_o14.b1 MSMg01no073_o14.b1 CHROMAT_FILE:
MSMg01no073_o14.b1 PHD_FILE: MSMg01no073_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:07 2005
         (486 letters)



>mm_chr11_3067080_3067965
          Length = 886

 Score =  853 bits (441), Expect = 0.0
 Identities = 453/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttgttccttctgcatggcccttgacacaaagtctactttgaatctcttgatacatgtaac 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttgttccttctgcatggcccttgacacaaagtctactttgaatctcttgatacatgtaac 398

                                                                       
Query: 68  aaaacctttttataactggttctgtgcttatgccccttgtggttctctgggttctgactg 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaaacctttttataactggttctgtgcttatgccccttgtggttctctgggttctgactg 338

                                                                       
Query: 128 tcagtactacacaagcccaggagagtacagcctgctgctttacagctatacttacttaga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcagtactacacaagcccaggagagtacagcctgctgctttacagctatacttacttaga 278

                                                                       
Query: 188 tctgaatccatgatccagcgtgtgtcattgggctattttgcgtctctgtactgggggcct 247
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 277 tctgaatccatgatccagcgtgtgtcattgggctattttgcgtctctgtactcggggctt 218

                                                                       
Query: 248 catgcctgcatagcaaacacattatcatctgagccatctccccagcctaagaaattattc 307
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 catgcctgcgtagcaaacacattatcatctgagccatctccccagcctaagaaattattc 158

                                                                       
Query: 308 aagtaaaaataagttatttaaagtgtatttaggtactgttttaaaatgtttaattagtgt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 aagtaaaaataagttatttaaagtgtatttaggtactgttttaaaatgtttaattagtgt 98

                                                                       
Query: 368 gcagttttatctgagtcggtttttgtattgtgaattcattaactctatttttattgagga 427
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  gcagttttatctgagtctgtttttgtattgtgaattcattaactctatttttattgagga 38

                                                
Query: 428 attaatgttctggtactgttaaacactatgttcataa 464
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  attaatgttctggtactgttaaacactatgttcataa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)