BAC Information

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BAC

Clone NameMSMg01-074C22
Chromosome11 (Build37)
Map Location 40,707,758 - 40,708,015
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
Downstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074C22.T7 (MSMg01no074_c22.b1)MSMg01-074C22.TJ (MSMg01no074_c22.g1)
ACCAG297298AG297299
length694695
length of high quality
(start - end)
54 (257 - 310)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no074_c22.b1 PHD_FILE: MSMg01no074_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:28 2005CHROMAT_FILE: MSMg01no074_c22.g1 PHD_FILE: MSMg01no074_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATAATTTGCGGCGCTAAACGACTCCTATTTCGAACCCGCCGCGGAA
NNCANAACGTTACAGCACCCGGCGNGNCAAANAANGAGCAGAAAAAAAAG
GGAGAAAGAAAGATATGCCCCCCNAGGAGANGNNANNNCCAGANACACNC
ACANAGGNNANGGNAGAANNANNNNNACNAACACCAAGNACAAGCCGGCT
NCNNAGCACGGAAAAAAGGGAGAGCCACCAGCAGGAGGCGAACCCCAACA
TTGTAGAATTATTTTATTGAAATTTCTACCAGTGTCATATTTTCTGATCT
TTCAGAAAGCAGTTTTTTTTTTTTTCTACCGCCCNGCACAGGCACCCCCA
GGACCCTCTTTTTTCCCCCCTCCCCCCTGCAGAGATTGCTCAACAGTTAA
GAGCACTGACTGCTCCTCAAAAAAAACACTTTGGTTTTCAGCATCCACAT
CACTTAGGGTAGCACATACTCGCTGTAACTCCAGCTCCACAAGTTCTAAT
GTTATCTTCTGGTCTGTATGAGCATCTGCATCCATACACACACCCCCACT
TATTTCTTCTCATATACACTCTCTCCCCCCCACCCTCTCGTCATTTACGC
CAACCACCCCCATAATGTAAACCCAACGCTGGCCCTTGGGCACTCCCCCC
TGTTTTTTTTTTTTTTTTCCCCCCCCTCACCACTTGGTCGCCCN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGAGACATGGGAGGAGTTGGAAATGG
GAGGAGGAAGGCAAGAGTGTCTGAAACTATAAACCAACCAACCAACCAAT
CAATCAATCAATCAATCAATCAACCAACCAACCAACCAACCAACCAACCA
ACCAACCAACCAACCAACCAACCAACCAACCAATCAACCAACCAAACCAA
CCAACTCCTAAAAACCAATTTTTTCTGAACACTGTTCATGAATTTGTCCT
AGCTTATGTCTTAGAGAAACATCATATGGAAAGTAAATAACCAAGATCCA
GGAATCTTCTATGATATAACACTCTCTCATCTCAGCAGGCAGCAAAAGTG
CTAGAGTTTTATTTAACATCTCAAGTGAAGCAAGCAGGCGGTAATAGAGA
AGGGACATGAACAATTTGAATTAAAGCTATGTTCGCAATTCTTAGTTAGA
TTCTATATTTGAATGTGTTGGAGGAAAGAGAAATAAGGGTATGGAGAGTA
CTGGAAAAAGACTTCAAGGCTACCCTTACCGTTTGTTCTGTTATTATCCT
AGTTACAATTCTCTTATTGCGGAATTTATTAGTTAGAACCCCCCTACCAA
CTATTTATGGGACAACGGTTCCTACACCCACACATGGGTAAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_c22.g1 MSMg01no074_c22.g1 CHROMAT_FILE:
MSMg01no074_c22.g1 PHD_FILE: MSMg01no074_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:28 2005
         (290 letters)



>mm_chr11_40707526_40708215
          Length = 690

 Score =  410 bits (212), Expect = e-119
 Identities = 256/290 (88%), Gaps = 32/290 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagacatgggaggagttggaaatgggaggaggaaggcaagagtgtctgaaactataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  
Sbjct: 233 cagagacatgggaggagttggaaatgggaggaggaaggcaagagtgtatgaaactata-- 290

                                                                       
Query: 61  ccaaccaaccaaccaatcaatcaatcaatcaatcaatcaaccaaccaaccaaccaaccaa 120
             |||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 291 --aaccaaccaaccaatcaatcaatcaatcaatcaat----caaccaaccaaccaaccaa 344

                                                                       
Query: 121 ccaaccaaccaaccaaccaaccaaccaaccaaccaaccaatcaaccaaccaaaccaacca 180
           ||||||||||||||||||||||||||||                        ||||||||
Sbjct: 345 ccaaccaaccaaccaaccaaccaaccaa------------------------accaacca 380

                                                                       
Query: 181 actcctaaaaaccaattttttctgaacactgttcatgaatttgtcctagcttatgtctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcctaaaaaccaattttttctgaacactgttcatgaatttgtcctagcttatgtctta 440

                                                             
Query: 241 gagaaacatcatatggaaagtaaataaccaagatccaggaatcttctatg 290
           ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 gagaaacatcatatggaaagttaataaccaagatccaggaatcttctatg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)