TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACTGGATCCGAAACACAGCATTTAAGCTAGACTGACTGGTTGGG
AAGTCCTAGCCATCCTTTTAGCTCTGCTGCCTATAGGACTGGGCAACAGG
CATATACGGCCACACTCATGCTTTTACTCTAGTCTGTAGGATCCAAGTTC
AGTTCTTCAAGCTTGTATAGCAGGAAGCTCTTAGCCAGTAAGCTATCTTC
CCAGCATGCATTAGATTCTTGTTCTTGGAGATTATTTAAATTCTCATAGA
CTCTAGTAGTTTGCTATCATTTAAATGAAAAGCTCAATGGTGCCTATATG
GTGCTATCCTTGGAACAAATAGCATATTTTTTAACCAGCAAATAGTCTAT
TGATCAATGGTTTCTAACACCCACTATTTATAATAGGTATGGCTACAAAT
AGTTGCCAATCTCTCTATAAAGATCTTGGAAGTACTATTCACTATCTGAT
ATTATATTGGAAGAAAGTGCCTTATTCTGAGATCTTGAATCATGATTTAG
CGTCTGTGTCTTTGCCAAACGTCTCTTACTCACTCCTGTCAGATCTGATG
CACTGAAAACTCATAAACAGAGCTTTGCTTGATAGCCGGATATCATAGGT
GCCTCGAATCATGATGCAGAGGCTCCATTTTCACTCTACAATN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAACTAAGTTAAGGGAGGTC
AGAGTACTCAAAATTTAGTCACGTGAGTGCCTGTGAACCAGACTGGAATG
TTCAGCCAGGTCAGGGGGAGACAGGGTCAGATGTCAAAGGTTATTGAGAG
AGTTCTTCACACCGTGTTGCTTCAAACATCCGCCCTTCCCCAACCCCAGG
CCCACACAATCAATGTCTACATTTTCAGATCTTTATGTTGTGTATATGCA
AATTAATTTTTGAAAGACAAGAACTGAGGTACTCATGAGGATGCATGAAA
CTGGGTTTCCAGAAGACCCCAGCCTTCATCCTCAAGAAGGTGACCTTGGG
TAAAAAAAGAATTAAACGGCCATGCTTCACTTTCTATATGTTAACTAGTG
GGCTCTGAACTTCACAACTCTCCAACTCTGTTCCTTCCTCCAGTGGGCCT
TAGCTGAAGGGAGATGGTGATACAGTTATGGTTTTGGGAGTCTAATCTAA
GGAAGGTTTCAAGATGAACTGGAGGAGAGAGCAGAAAGAAAAACAAAACC
TGGAACTTCAGCTAATAACAGTGTTGTTATTAAAACATGAAATGATCAGA
ATATTGAAAGGATTTCTTAATACAAAATCAGTTACCAGTATAGATACCN

Query= MSMg01no075_k10.b1 MSMg01no075_k10.b1 CHROMAT_FILE:
MSMg01no075_k10.b1 PHD_FILE: MSMg01no075_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:21 2005
         (339 letters)



>mm_chr11_17917144_17917882
          Length = 739

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatttaagctagactgactggttgggaagtcctagccatccttttagctctgctgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatttaagctagactgactggttgggaagtcctagccatccttttagctctgctgcct 260

                                                                       
Query: 61  ataggactgggcaacaggcatatacggccacactcatgcttttactctagtctgtaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataggactgggcaacaggcatatacggccacactcatgcttttactctagtctgtaggat 320

                                                                       
Query: 121 ccaagttcagttcttcaagcttgtatagcaggaagctcttagccagtaagctatcttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagttcagttcttcaagcttgtatagcaggaagctcttagccagtaagctatcttccc 380

                                                                       
Query: 181 agcatgcattagattcttgttcttggagattatttaaattctcatagactctagtagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcatgcattagattcttgttcttggagattatttaaattctcatagactctagtagttt 440

                                                                       
Query: 241 gctatcatttaaatgaaaagctcaatggtgcctatatggtgctatccttggaacaaatag 300
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctatcaataaaatgaaaagctcaatggtgcctatatggtgctatccttggaacaaatag 500

                                                  
Query: 301 catattttttaaccagcaaatagtctattgatcaatggt 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catattttttaaccagcaaatagtctattgatcaatggt 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no075_k10.g1 MSMg01no075_k10.g1 CHROMAT_FILE:
MSMg01no075_k10.g1 PHD_FILE: MSMg01no075_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:22 2005
         (618 letters)



>mm_chr11_18057653_18058670
          Length = 1018

 Score = 1180 bits (610), Expect = 0.0
 Identities = 616/618 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataactaagttaagggaggtcagagtactcaaaatttagtcacgtgagtgcctgtgaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ataactaagttaagggaggtcagagtactcaaaatttagtcacgtgagtgcctgtgaacc 759

                                                                       
Query: 61  agactggaatgttcagccaggtcagggggagacagggtcagatgtcaaaggttattgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 agactggaatgttcagccaggtcagggggagacagggtcagatgtcaaaggttattgaga 699

                                                                       
Query: 121 gagttcttcacaccgtgttgcttcaaacatccgcccttccccaaccccaggcccacacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gagttcttcacaccgtgttgcttcaaacatccgcccttccccaaccccaggcccacacaa 639

                                                                       
Query: 181 tcaatgtctacattttcagatctttatgttgtgtatatgcaaattaatttttgaaagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tcaatgtctacattttcagatctttatgttgtgtatatgcaaattaatttttgaaagaca 579

                                                                       
Query: 241 agaactgaggtactcatgaggatgcatgaaactgggtttccagaagaccccagccttcat 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agaactgagggactcatgaggatgcatgaaactgggtttccagaagaccccagccttcat 519

                                                                       
Query: 301 cctcaagaaggtgaccttgggtaaaaaaagaattaaacggccatgcttcactttctatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cctcaagaaggtgaccttgggtaaaaaaagaattaaacggccatgcttcactttctatat 459

                                                                       
Query: 361 gttaactagtgggctctgaacttcacaactctccaactctgttccttcctccagtgggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gttaactagtgggctctgaacttcacaactctccaactctgttccttcctccagtgggcc 399

                                                                       
Query: 421 ttagctgaagggagatggtgatacagttatggttttgggagtctaatctaaggaaggttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttagctgaagggagatggtgatacagttatggttttgggagtctaatctaaggaaggttt 339

                                                                       
Query: 481 caagatgaactggaggagagagcagaaagaaaaacaaaacctggaacttcagctaataac 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 338 caagatgaactggaggagagagcagaaagaaaaacaaaacctggaacttcagctaaaaac 279

                                                                       
Query: 541 agtgttgttattaaaacatgaaatgatcagaatattgaaaggatttcttaatacaaaatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agtgttgttattaaaacatgaaatgatcagaatattgaaaggatttcttaatacaaaatc 219

                             
Query: 601 agttaccagtatagatac 618
           ||||||||||||||||||
Sbjct: 218 agttaccagtatagatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)