BAC Information

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BAC

Clone NameMSMg01-076C17
Chromosome11 (Build37)
Map Location 20,983,012 - 20,983,280
singlet/doubletsinglet
Overlap genenone
Upstream geneActr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
Downstream genePeli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076C17.T7 (MSMg01no076_c17.b1)MSMg01-076C17.TJ (MSMg01no076_c17.g1)
ACCAG298810AG298811
length806807
length of high quality
(start - end)
55 (111 - 165)269 (128 - 396)
definitionCHROMAT_FILE: MSMg01no076_c17.b1 PHD_FILE: MSMg01no076_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:03 2005CHROMAT_FILE: MSMg01no076_c17.g1 PHD_FILE: MSMg01no076_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATACAACCCATAAAAAACCCATAAACACAAAACTCATACTCCCCTTTT
TATTTTATATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTAGAG
GATCCGCGGAATTCTAGAAAGCCGAGACTATTGCTGCTAATACCCTAAAG
TGAAACTATACTTCGCCTAAGAATTGTATATGCAATCAAAGCACCAAGAA
ACCATGAGGGTAGGATTAAAACCATTTTCAGGGGACTCCAAATTTTACCT
TTCTGTAGACAGTAAATCAGGTAAGAAAGAATTCAGGACAAGACTAGTCT
CACAGACAGTGAGCGTTGCAGCTCTAGACAAAAGTAAAGGTCTTACATCT
CAGGAATCATCAGCCCCCATTCGATCAAGAGGACAAATGAAGATGGCAGC
AAGGTGCGAAGAAAAACGTATCCATTAAGTTTCTGGATAATAAGTGATGT
CTAGACTTTAAACATACTCTTGTCATTTTATGTAATTTATATTAGAATAT
TCTTATTCGTATTAACTATTAAATATATTTTTTGACCTATGCTTAATATT
GCCATAATTTAATTTCATTTTGACACTTGAATGATTATTGGTTAAACTGT
TTTCGCAACCTTTTACATTGAAAACATCTACATCTTTTACAGAACTCTCC
AATTTGCACAACTAACGTTCTAAACTTAATGTATAATTCCTCCCATTTTC
TTATTCCGTTCACACCTCATACTAGACCACCCCCTGAACGTTTGACCAAA
AGTTTGTCCTAAAGGATAGTCTCTGCGTGTACCTTATATTTCGTTGTGAC
ATGCCA
NNTTTTNNNNNNNNNNNNNCCTCCCCCCCCCCCCCCCCCNTNCTTCGTTT
NCNTCCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAGCTGGGGCTTTGGAAGC
CAGAGAGGCGCAGCCCAGAGATCTTCAACCTGCAGAAATAACTCCTCAGG
TCTATGGAGAAATTAAAGAGAAATAAACTAAAGCATTCAAGGGATAGCTT
ACTACTTGAATTACTAAAGGAACAGAGAACTAGTGGAAATTAATAGGAAG
AAAGAATCAGGTTATTTGGATCTCAGCTTAACTGGAAGATCAAACAGAAT
CAGACTGTCATGAACTTATATTGTTCATCTCATCAAGTCTAAGTGAGGTA
GAGTGTAGGTGGAGTTTGGCTGCCGCGATAGTTTGTCTCTCTTTTGTTTT
GTATTATTTCCTACTATTATATCTCTGTTTATTATTTTCTTCTCTTTCTT
CCCTCCCTCCCTCCTTTTTTTCCTTATTTTCATTCAAAATACCAAACCCC
CCTAACTTCCTCTCAAACCTTTACTACCTTGGTTCTACGCCACTACTTAT
TCTCCGTCCCTCCTCTCATCTCTACTATTCCTTTCTTCTTCTTTTTCTCT
TTCTCTTCTCACCCTCATCATCATTCTTCCCTTACTTTCCCCCTCTTTTC
TCTAATATTTATCCCATCCTACTCTTTTTCTCCTATCTCTACCCTCCCAC
ACCTCCCACACTATATTCTAATGTCTTCCCACACCCATCTCTACTCTCTC
TCCGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_c17.g1 MSMg01no076_c17.g1 CHROMAT_FILE:
MSMg01no076_c17.g1 PHD_FILE: MSMg01no076_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:03 2005
         (269 letters)



>mm_chr11_20982812_20983480
          Length = 669

 Score =  513 bits (265), Expect = e-150
 Identities = 268/269 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaagctggggctttggaagccagagaggcgcagcccagagatcttcaacctgcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaagctggggctttggaagccagagaggcgcagcccagagatcttcaacctgcagaa 260

                                                                       
Query: 61  ataactcctcaggtctatggagaaattaaagagaaataaactaaagcattcaagggatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataactcctcaggtctatggagaaattaaagagaaataaactaaagcattcaagggatag 320

                                                                       
Query: 121 cttactacttgaattactaaaggaacagagaactagtggaaattaataggaagaaagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttactacttgaattactaaaggaacagagaactagtggaaattaataggaagaaagaat 380

                                                                       
Query: 181 caggttatttggatctcagcttaactggaagatcaaacagaatcagactgtcatgaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggttatttggatctcagcttaactggaagatcaaacagaatcagactgtcatgaactt 440

                                        
Query: 241 atattgttcatctcatcaagtctaagtga 269
           |||||||||| ||||||||||||||||||
Sbjct: 441 atattgttcaactcatcaagtctaagtga 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)