GGTGATATTATGTTATCGACGACTCTCCATCATCCTCCCCCCCACACCAT
CCTCCTTGGTCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGA
GAGAATCCGCGGAATTCACAGACCTTACCCACTGTATCTGCAAAATGGCT
GATTCCATCTTCATCCCCTCATGGCCCATGCCAACAGTGAAACTCTCACA
AAGAACAACCTTTGCACAGGCACTCAACCATTATGGTGAGGATTACATCT
AATAACGTAAAGATGACAACTAATGCATTCCCGAGGAAGGAGCTGGCAAT
CTACGTATGCTGAAGTGAGGACTAATTCCTCCTGTTGATAGTTTTAGAAA
ATCAGCTGTGTTATGCATGTGCTGGAACATTTTTGTAAGCTGCTTTACAC
CAACCAACGTTCTTAGGTCTTCCAGGAATAACACAGCAAATAGTCCTTTT
TTTTTTTTTATAAAAACCTTTTAATTAATCTCCTCAAAACTCAAATTATT
TACACGGCACTACCGCACAATATCTATCAAATGATATTCATGGCATATGC
TCAGGACTGAAAAAAATGTTTTATTTCCGAGGTTGAAAGGTCTTGTTATT
CATAAATAACTGGGATTAGATTCCTTATTACGTTATCTACCTAGAAAAGT
ATATCATGATATACTGCCCTCACGAATATATTATCTAACATTTACGTACA
CCCCATATCTAAGGCGCTTGATAGCCCAAGTATTTTATACTAGAATAACC
TTAATTCAAACGCCCACCTTATATGATTGCTAAACTATATCCATGTCGAA
CCCATCCTCTCCAAAAT

GGGGGGGGGGGGGGGGGGGCGGAGGCGCGCGGCGACANACCCCCCTCCAA
CATTCACGATGAAGTGGGAGGCCTGGNGGCCGCCTGTTTCCGACTAGAGG
NGAACNANAGAAGGTTTCAACACCACAACATGAGCCANACGGGAGAGAAG
AGCACGGNGNCAGACCTTGGCCTGACTGGAGAGCATGACAGCGAACTGAT
GCTAGATTCACTGACATCTGTTTCAGCACACATCACTATGAGTATCTCCC
ATAATGTTATATATGAACTGCATAAAGAGCTGTGAATTCTGTTAGTAAAA
CGAAGAGGATTAAAGTGTTACAGAAGCATTTTAGAATTTACCACCTCTTA
TGTAAACCAGGACCTTTTATTATATTTTTTTTTTTCAGAGACTAAAAGAC
AAAAGCACAAGTTCTTTATATTCCCCCTCCCACTTTTGATATATATGTAA
AATTTTTTTAAATGTTAATTTAATAAAAAAGTTATCACAATCCACTTAAT
GAGTACTAATCCTTTCCAAGTTATCTTTCTTTATGAGAACATATAAGATG
TACTCCTGGGACATATTAAGTGTATAGCACATTAATATCATCCACAACCA
CCATGTACCACATGAGATTTATAAAACTTATCTATCCATATAACTTCCAG
ATTACATGCTTTTACCCAAATCACATCAGCCCTTTTATATTATGTATAGC
TGACTTTAAACCCCCACTGAGAAATGTTTTGTTTCCTTTTGCAACCCATG
CGCCCTAAATACTAATCTTCACAAAAAACAATACGTCCCCTTTCNTCTA

Query= MSMg01no076_c21.b1 MSMg01no076_c21.b1 CHROMAT_FILE:
MSMg01no076_c21.b1 PHD_FILE: MSMg01no076_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:04 2005
         (153 letters)



>mm_chr11_41949955_41950507
          Length = 553

 Score =  242 bits (125), Expect = 9e-69
 Identities = 140/145 (96%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcacagaccttacccactgtatctgcaaaatggctgattccatcttcatcccctca 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcacagaccttaaccactgtatctgcaaaatggctgattccatcttcatcccctca 265

                                                                       
Query: 66  tggcccatgccaacagtgaaactctcacaaagaacaacctttgcacaggcactcaaccat 125
           |||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct: 266 tggcccatgccatcagtgaaactctcagaaagaacaacctttgcacagtcattcaaccat 325

                                    
Query: 126 tatggtgaggattacatctaataac 150
           |||||||||||||||||||||||||
Sbjct: 326 tatggtgaggattacatctaataac 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no076_c21.g1 MSMg01no076_c21.g1 CHROMAT_FILE:
MSMg01no076_c21.g1 PHD_FILE: MSMg01no076_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:04 2005
         (109 letters)



>mm_chr11_42073058_42073566
          Length = 509

 Score =  180 bits (93), Expect = 2e-50
 Identities = 105/109 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgctagattcactgacatctgtttcagcacacatcactatgagtatctcccataatgt 60
           |||||| ||||| ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 309 gatgctggattcgctgacatctgtttcagcacacatcactatgagtgtctcccttaatgt 250

                                                            
Query: 61  tatatatgaactgcataaagagctgtgaattctgttagtaaaacgaaga 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tatatatgaactgcataaagagctgtgaattctgttagtaaaacgaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)