BAC Information

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BAC

Clone NameMSMg01-078C08
Chromosome11 (Build37)
Map Location 21,963,986 - 21,964,215
singlet/doubletsinglet
Overlap geneEhbp1
Upstream genePeli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1
Downstream geneLOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078C08.T7 (MSMg01no078_c08.b1)MSMg01-078C08.TJ (MSMg01no078_c08.g1)
ACCAG299551AG299552
length738714
length of high quality
(start - end)
233 (44 - 276)367 (68 - 434)
definitionCHROMAT_FILE: MSMg01no078_c08.b1 PHD_FILE: MSMg01no078_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:23 2005CHROMAT_FILE: MSMg01no078_c08.g1 PHD_FILE: MSMg01no078_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGTGTCATTCCTATCTTTTGAATTGCTCTGTACCATATTTTTACCA
TATAACTCACATCTTTATGGTATTATAATTATTTGAATGGGTTTTTTTCT
GAGTAGAATAAATGTCTTATAAGAACTCACTATCTCCTCAGCATCTAGCA
CAGTGTTTTGCAAGTTATCTAACAGAACGCTGTAGATCGATGTTTCTCAA
CCTTCCTAAGGCCGTGAGTTTTAATTCCCCCCTCCATGTCACAGTTGAGG
AGCCATAAACCTATTCTGTTATTATTCTATAACTATAATTTTGCTATTGT
TACAAATCGTATCGTGGACCTCTGGTATATCCCACTCATGGCGTACTCCC
ACAGGGAAGAGCCACTGACGTGTTTGGCCTTGCCCTTCACCCCTATTTAC
CCCTTCCTCCCCTCCTTTGTCTTTTTTTCATTCATTTTCGCTCCTTATTC
CTTTTTGTCTCTCTTTTTTTTTTTCTTTCTCTTCCCCCCCCTCCTTTCTT
TATTCCCTTATTTTCTCCTGCCCCCTTTTCTCTTTTATTTTTTCTTTTTC
CCCCCTCCCCCCCCTATTTCCCCTCCCTTCTCCTCCTCCTTCCTCTTTTC
TTTATTCATTCATTTGTATCTCCTCCTCCCTCTTCCTTTCGACACTTCTT
TTTTCTCTCTTCCTTTTTTTTCATCTTATCTTACCCCT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGTGCTATACCCCATTTTTCAATAGA
GTTATTTCTTTTCTGTAGTCAAACTTCTTGAGTTCTTTATATATATATTG
GATATTAGTCCCTTATCAAATGTAGGACTGGTAATGAACTTTTCCCAATC
GGTTGGTGACCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTATAGAAGC
TTTGCAATTTTATGAGGTCCCATTTGTCGATTCTTGACCTTATAGCATGA
GCCATTGCTGTTCTGTACAGGAATTTTTCCCATGTACCAATATCTTCGAG
GCTTTTCCCCACTTTCTCCTCTATAAGTGTCAGTGTCTCTGGTTTTATGT
GGAGTCCTTGATCCACTTAGATTTGACCTTTGTACCAGGAGATACCAATG
GAGCAATTTGAATTCCTAAATGCTGTCTCTTTTCCCACTGGATGGCTTTA
GCTCCTTTGTCAAAGATCCACTGACCATATTTGTGTGGGTTCATTTCTGG
TTCTTCACTTCTGTTTCTTGATCTATATGTCTGCCTGTCGTTCTCTCCTG
TGCTACCCTTTATCCCTCTTCGTTCTGTTTTTTGTTTTTACTCTCTTTTT
TTTTCCTTCCCCTTCAACTTTCTTTTACTGTTCAAAACACCCATATCTCT
TCCTATTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_c08.b1 MSMg01no078_c08.b1 CHROMAT_FILE:
MSMg01no078_c08.b1 PHD_FILE: MSMg01no078_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:23 2005
         (233 letters)



>mm_chr11_21963882_21964514
          Length = 633

 Score =  429 bits (222), Expect = e-125
 Identities = 228/230 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggtgtcattcctatcttttgaattgctctgtaccatatttttaccatataac 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggaattctggtgtcatttttatcttttgaattgctctgtaccatatttttaccatataac 275

                                                                       
Query: 64  tcacatctttatggtattataattatttgaatgggtttttttctgagtagaataaatgtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tcacatctttatggtattataattatttgaatgggtttttttctgagtagaataaatgtc 215

                                                                       
Query: 124 ttataagaactcactatctcctcagcatctagcacagtgttttgcaagttatctaacaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ttataagaactcactatctcctcagcatctagcacagtgttttgcaagttatctaacaga 155

                                                             
Query: 184 acgctgtagatcgatgtttctcaaccttcctaaggccgtgagttttaatt 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 acgctgtagatcgatgtttctcaaccttcctaaggccgtgagttttaatt 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)