BAC Information

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BAC

Clone NameMSMg01-079D20
Chromosome11 (Build37)
Map Location 115,892,600 - 115,893,118
singlet/doubletsinglet
Overlap geneUnk
Upstream geneLOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b
Downstream geneUnc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079D20.T7 (MSMg01no079_d20.b1)MSMg01-079D20.TJ (MSMg01no079_d20.g1)
ACCAG300365AG300366
length720718
length of high quality
(start - end)		522 (36 - 557)463 (66 - 528)
definitionCHROMAT_FILE: MSMg01no079_d20.b1 PHD_FILE: MSMg01no079_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:49 2005CHROMAT_FILE: MSMg01no079_d20.g1 PHD_FILE: MSMg01no079_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAATCCGCGGAATTCATGCC
TGGAACCCTCCAGGTAAAAGGAGAGAACCAATTCCTTCAGACTGTTTTGA
CCTCCACACCTGCACGTGGCGCTGCGTGAGTGTTCCCACAGACTCACATA
CAAATAAACAAATGTAGATGTTTTTCACAGTTCCACTAAGTTTACAAATT
TTTGTGTGTGACCAGATAAGTGATGTTATTCTGATGTTAGACCTTCTTAT
CAAAAGCAATGGCAAGGTTGCAGAGTGAGAGAGAACTCCAGTAAGAAAGG
ACCAACTGATGACCACCATACTTGAAAGGCTAACCTGAGTTACAGTCAAG
TTTGGATGACGTCAGCCAACACTAGTCATTTGAAGAAACCAATACATTTT
CTATAACCAATGTTCCCCTGTCCCATCTCCCAAAAGTGTTGAATCAGAGC
TGCTTCTGCCTGACTTTAGTTCGGATTCTGCCTGCTCCTGGCTGGACGCT
GGAGTGTTGTTCAATCTCTCGGGTTCTGACATTTCCACAGGTTGGGATCT
CCTAAACTGGCCCATCACTCAGGCACCCAGTAGGGACACTCCTGGCACAC
AGCAGTGAACGGAAACCAACAGGTCTTTACAAGAGGAACTACAGCATTGG
CCTTTGTCTCACAGAAACTAGGCCTACTGTGACATGACCGCAAGGAAGGC
AGGAACCTAAGCTTGTACAG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAAGCCAGCCTGGTCATCATAGGGAACTGTACCCA
AAACCAAATAAGAGAAACCCCTCACAGGTGTTTCTCAAGTCCTTGGTTCA
CATTTTTTTTTTAAATCTGTTTTACGAATATGGGTGTTTTGATTTTTTGC
GTTTGTCTAAGTAACATGTGTGGTCCTGGGGAGGCCAGAAAAGGGCATTG
GATCCCCTGGGATTGGAGTTACAACTGGGAACCACCATCCATGTAAGGAC
TGGGAACTGAACCTGGATACTCTAGCAGAATAGCCAGTGTTTGTTTGTTT
GTTTGTTTGTTTCCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG
GAACTCACTCTGCAGGCCAGGCTGGCCTCGAACTCAGAAATCCGTCTGCC
TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCTGGCTA
CAGCCAGCGTTTTTTCCCACCCCTTAGGTTAAAGTGACCTGCGACAGCTT
GTGGAGAGGTTGTGGCTGGAACAGTTTTGACCTCTGTCTCAAAGCCTCCA
ACTAAGTCTTCTTTAACTCCTTCAGACTTCCTCAGAAATATCACATCTAG
GGCTTGGTGGAGGTGGCTCCTGGCCCTGAGGTGACCCTGACCTTCTCAAT
AGGACCTGGCTGTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_d20.b1 MSMg01no079_d20.b1 CHROMAT_FILE:
MSMg01no079_d20.b1 PHD_FILE: MSMg01no079_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:49 2005
         (522 letters)



>mm_chr11_115892283_115893204
          Length = 922

 Score =  957 bits (495), Expect = 0.0
 Identities = 513/519 (98%), Gaps = 1/519 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattc-atgcctggaaccctccaggtaaaaggagagaaccaattccttcagactgtttt 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gaattcaatgcctggaaccctccaggtaaaaggagagaaccaattccttcagactgtttt 777

                                                                       
Query: 64  gacctccacacctgcacgtggcgctgcgtgagtgttcccacagactcacatacaaataaa 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gacctccacacctgcatgtggcgctgcgtgagtgttcccacagactcacatacaaataaa 717

                                                                       
Query: 124 caaatgtagatgtttttcacagttccactaagtttacaaatttttgtgtgtgaccagata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 caaatgtagatgtttttcacagttccactaagtttacaaatttttgtgtgtgaccagata 657

                                                                       
Query: 184 agtgatgttattctgatgttagaccttcttatcaaaagcaatggcaaggttgcagagtga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 agtgatgttattctgatgttagaccttcttatcaaaagcaatggcaaggttgcagagtga 597

                                                                       
Query: 244 gagagaactccagtaagaaaggaccaactgatgaccaccatacttgaaaggctaacctga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gagagaactccagtaagaaaggaccaactgatgaccaccatacttgaaaggctaacctga 537

                                                                       
Query: 304 gttacagtcaagtttggatgacgtcagccaacactagtcatttgaagaaaccaatacatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gttacagtcaagtttggatgacgtcagccaacactagtcatttgaagaaaccaatacatt 477

                                                                       
Query: 364 ttctataaccaatgttcccctgtcccatctcccaaaagtgttgaatcagagctgcttctg 423
           ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 476 ttctataaccaatgttcccctgtcccaactcccaaaagtgttgaaccagagctgcttctg 417

                                                                       
Query: 424 cctgactttagttcggattctgcctgctcctggctggacgctggagtgttgttcaatctc 483
           |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 416 cctgactttagttcggatgctgccagctcctggctggacgctggagtgttgttcaatctc 357

                                                  
Query: 484 tcgggttctgacatttccacaggttgggatctcctaaac 522
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tcgggttctgacatttccacaggttgggatctcctaaac 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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