Query= MSMg01no079_n22.b1 MSMg01no079_n22.b1 CHROMAT_FILE:
MSMg01no079_n22.b1 PHD_FILE: MSMg01no079_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:37 2005
(583 letters)
>mm_chr11_62188987_62189966
Length = 980
Score = 1040 bits (538), Expect = 0.0
Identities = 564/574 (98%), Gaps = 4/574 (0%)
Strand = Plus / Minus
Query: 11 ttccaggacagccatgcctaaacagagaaaccctgtctcg-aaaacaaaaaaacaaaaac 69
|||||||||||||| | || ||||||||||||||||||| |||||||||||||||||||
Sbjct: 832 ttccaggacagccagggttacacagagaaaccctgtctcgaaaaacaaaaaaacaaaaac 773
Query: 70 aaaaacaaaagattgcacaggtggtacaaccagaagattctgacaatgacttcctgcttc 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aaaaacaaaagattgcacaggtggtacaaccagaagattctgacaatgacttcctgcttc 713
Query: 130 atctactatctttgtatgcctctttgtatatcatggccaaatttacttactctgttgtta 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 atctactatctttgtatgcctctttgtatatcatggccaaatttacttactctgttgtta 653
Query: 190 ttataagttaatatatatttttttcattttactgccttgaggctgatttatttcatattt 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ttataagttaatatatatttttttcattttactgccttgaggctgatttatttcatattt 593
Query: 250 ttaggtttatacatcatacttaatttatcatgttagatgtctggatggcattagttcccc 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttaggtttatacatcatacttaatttatcatgttagatgtctggatggcattagttcccc 533
Query: 310 gagctgaaaaaatacccacctaaggagctaagggacaattgcttaaacagattgacacag 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gagctgaaaaaatacccacctaaggagctaagggacaattgcttaaacagattgacacag 473
Query: 370 cttcctgcaatgtcgaaattggatgtatgctagttatagaaaaatgaagacaataatata 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cttcctgcaatgtcgaaattggatgtatgctagttatagaaaaatgaagacaataatata 413
Query: 430 tttcagtttatattattattcactgttctttgtaaattttctttgtaagctgagtgcttc 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tttcagtttatattattattcactgttctttgtaaattttctttgtaagctgagtgcttc 353
Query: 490 tgctgtgagcactcttagaatattactggtgatgcacactttattattactagagtttaa 549
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 352 tgctgtgaggactcttagaatattactggtgatgcacact---ttattactagagtttaa 296
Query: 550 actgtgtgtaactagtgtttgttgctttccttgt 583
||||||||||||||||||||| ||||||||||||
Sbjct: 295 actgtgtgtaactagtgtttggtgctttccttgt 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 980
Length adjustment: 10
Effective length of query: 573
Effective length of database: 970
Effective search space: 555810
Effective search space used: 555810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_n22.g1 MSMg01no079_n22.g1 CHROMAT_FILE:
MSMg01no079_n22.g1 PHD_FILE: MSMg01no079_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:37 2005
(511 letters)
>mm_chr11_62064290_62065201
Length = 912
Score = 839 bits (434), Expect = 0.0
Identities = 488/512 (95%), Gaps = 12/512 (2%)
Strand = Plus / Plus
Query: 1 catttccttcgttcttgtggttctgcacttgtctgttgccctcccattggtgcttggtgg 60
||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 201 catttccttcgttcttgtggttctgcacttgtctgttgcccgctcactggtgcttggtgg 260
Query: 61 ccgtttgaactctttccatagagcagtcacatgccccccccccacaccccctgcttgagt 120
||||||||||||||||||||||||| ||||||||||||| ||| |||||||
Sbjct: 261 ccgtttgaactctttccatagagcaatcacatgccccccgccc----------cttgagt 310
Query: 121 tgccacatctaggggaagccctttgggcttgcccctggaagagccccagatacacagagg 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgccccatctaggggaagccctttgggcttgcccctggaagagccccagatacacagagg 370
Query: 181 cctaatacccaggaccggctccaagtagctcttgtgtcacgtgactcgagcaggaagttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cctaatacccaggaccggctccaagtagctcttgtgtcacgtgactcgagcaggaagttc 430
Query: 241 cataaatgtttaaatctgttagttcttgtcctggggtttgctgggcgggtcttgaagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cataaatgtttaaatctgttagttcttgtcctggggtttgctgggcgggtcttgaagaaa 490
Query: 301 gtgggtgtgggtgtcttaaggggaaacagatgtgaatcactggctctttacttctccttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtgggtgtgggtgtcttaaggggaaacagatgtgaatcactggctctttacttctccttt 550
Query: 361 gcgtttgctaagggtgaggggccagtcggaggtgaagggagggaaaacagcgtggagccc 420
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 551 gcgtttgctaagggtgaggggccagtcggaggtgaagggaaggaaaacagcatggagccc 610
Query: 421 ggtgtgcccgttcccaccccccgggcctgcgctcgggggtctgaagtgtgcactgcagtc 480
||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct: 611 agtgtgcctgttcccaccccc-gggcctgcgctcgggggtctgaagtgtgcacagcaatc 669
Query: 481 -tccccttccacacccaggcatgtatgagtgt 511
|||||||||||||||||||||||||||||||
Sbjct: 670 ctccccttccacacccaggcatgtatgagtgt 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 912
Length adjustment: 10
Effective length of query: 501
Effective length of database: 902
Effective search space: 451902
Effective search space used: 451902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
