BAC Information

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BAC

Clone NameMSMg01-079O13
Chromosome11 (Build37)
Map Location 25,819,621 - 25,983,406
singlet/doubletdoublet
Overlap gene5730522E02Rik, LOC100042328
Upstream genenone
Downstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079O13.T7 (MSMg01no079_o13.b1)MSMg01-079O13.TJ (MSMg01no079_o13.g1)
ACCAG300878AG300879
length702701
length of high quality
(start - end)		526 (42 - 567)552 (70 - 621)
definitionCHROMAT_FILE: MSMg01no079_o13.b1 PHD_FILE: MSMg01no079_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:39 2005CHROMAT_FILE: MSMg01no079_o13.g1 PHD_FILE: MSMg01no079_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,982,898 - 25,983,406)(25,819,621 - 25,820,172)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTAATAACTCCATAAACTGTGAACAGCCTACCAAACCATCTTCTACAA
CAGTCCAGACTTTTAATCTGGGCCTACCACCACTGTTTCCCAATTAAACA
GCCCAAAGAGGCAGGCCTTCGAATGGATTAATGACCTGCAAAATTTCATT
TAAACATAGCCATTCTTGAATTTTATTAGTGGAAAAATACAAACTGGTCT
GTGGTCATGGATTATTGCAGATTCACTCCAGACTGCCGATTTGAACTCTG
ATGAACCTGCGACACTCTCCATTAAGCTTCAAAATGAGCTTTCTCTTAAT
TGGGGAGTAGGATGGGAAAGTAAACTCATGGCCAAGGATGCCAGATCGGT
GAACATTTCTTTACTTTGGACAGTGTTAAAACACATTTTGATGTTCACAG
AGACCACCCACACACAGGCGAGTGGGCATAGAACTGAGTTCATTTATTAG
CTTTGCTCTATTCCAGAACACACACACACACACACACACACACACACATA
CACACACACACACACACACACGGTACTTTTAGATGATAAAATTAATTTCG
GAAAGATTATATGACAAGTGCCAGGTTAAATTTTTAATAGTAATTCTATG
ACTAGAGCACACATATTCTATGGATACATAAAGAACAGAGCTCTACATTC
AT

TACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATGAAATTCTTAGGAAAATGGATGGATCTGG
AGGATATTGTTCTGAGTTAGGTAACCCAGCGTGGGCTTGAGTGATGGCTT
AGTGGTTACAAACATTGGCTGCTCTTCCAGAAAACCTCACCTCAATATCC
AGCACACACATGGCCAACAATCTTTTAACTCCAGTTCCTGATCTAATGCC
CTCAGCTAGCGTCTGCAGAAACTAGCCACACATATACAGAAAGCAAAAGC
AAAAGATAATATGCATGGAAGGGTGAAAAGTACTACAGACATTTACTAAA
AGTAAAGAGAACACATAAAGAGGCCTTTCATGTCTTGGATATAGAAGATT
AAATTTGTTGAGAATATCAGCCTTCTATTTTATGGGATTAAGACTATTGC
AATTAAAAGTTCTTCACATTTTTAACAAAGTTATTCTAGAGTTTAGTCTA
AGTAGAAATATAAGACATGCCTTAGAATTATGCTATGTGTCTGTTGAAGA
AAGAGAATATATCTATCTTGCCCAGCATCCCTTGCCTAGAGGACAGACTC
CATAAATATTTATTGAATAAAGAATAGCTAAGAAAACTGTGAAAAAATTC
TAGAGTTTCTAAGGGAAATTGTTTCTAGCACCGTCAATGAAGACTAGTCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_o13.b1 MSMg01no079_o13.b1 CHROMAT_FILE:
MSMg01no079_o13.b1 PHD_FILE: MSMg01no079_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:39 2005
         (526 letters)



>mm_chr11_25982731_25983656
          Length = 926

 Score =  961 bits (497), Expect = 0.0
 Identities = 506/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttaataactccataaactgtgaacagcctaccaaaccatcttctacaacagt 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggaattctttaataaatccataaactgtgaacagcctaccaaaccatcttctacaacagt 617

                                                                       
Query: 64  ccagacttttaatctgggcctaccaccactgtttcccaattaaacagcccaaagaggcag 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 616 ccagacttttaatctgggcctaccaccactgtttcccaattaaacagcccgaagaggcag 557

                                                                       
Query: 124 gccttcgaatggattaatgacctgcaaaatttcatttaaacatagccattcttgaatttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gccttcgaatggattaatgacctgcaaaatttcatttaaacatagccattcttgaatttt 497

                                                                       
Query: 184 attagtggaaaaatacaaactggtctgtggtcatggattattgcagattcactccagact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 attagtggaaaaatacaaactggtctgtggtcatggattattgcagattcactccagact 437

                                                                       
Query: 244 gccgatttgaactctgatgaacctgcgacactctccattaagcttcaaaatgagctttct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gccgatttgaactctgatgaacctgcgacactctccattaagcttcaaaatgagctttct 377

                                                                       
Query: 304 cttaattggggagtaggatgggaaagtaaactcatggccaaggatgccagatcggtgaac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cttaattggggagtaggatgggaaagtaaactcatggccaaggatgccagatcggtgaac 317

                                                                       
Query: 364 atttctttactttggacagtgttaaaacacattttgatgttcacagagaccacccacaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atttctttactttggacagtgttaaaacacattttgatgttcacagagaccacccacaca 257

                                                                       
Query: 424 caggcgagtgggcatagaactgagttcatttattagctttgctctattccagaacacaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 caggcgagtgggcatagaactgagttcatttattagctttgctctattccagaacacaca 197

                                        
Query: 484 cacacacacacacacacacacacatacac 512
           |||||||||||||||||||||||| ||||
Sbjct: 196 cacacacacacacacacacacacacacac 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no079_o13.g1 MSMg01no079_o13.g1 CHROMAT_FILE:
MSMg01no079_o13.g1 PHD_FILE: MSMg01no079_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:40 2005
         (552 letters)



>mm_chr11_25819421_25820372
          Length = 952

 Score =  998 bits (516), Expect = 0.0
 Identities = 543/552 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaattcttaggaaaatggatggatctggaggatattgttctgagttaggtaacccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaaattcttaggaaaatggatggatctggaggatattgttctgagttaggtaacccag 260

                                                                       
Query: 61  cgtgggcttgagtgatggcttagtggttacaaacattggctgctcttccagaaaacctca 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgggcttgagtgatggcttagtggttacaaacattggctgctcttccagaaaacctca 320

                                                                       
Query: 121 cctcaatatccagcacacacatggccaacaatcttttaactccagttcctgatctaatgc 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 cctcaatatccagcacacacatggccaacaatcttttaactccaattcctgatctaatgc 380

                                                                       
Query: 181 cctcagctagcgtctgcagaaactagccacacatatacagaaagcaaaagcaaaagataa 240
           ||||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 cctcatctagcatctgaagaaactagctacacatatacagaaagcaaaagcaaaagataa 440

                                                                       
Query: 241 tatgcatggaagggtgaaaagtactacagacatttactaaaagtaaagagaacacataaa 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgcagggaagggtgaaaagtactacagacatttactaaaagtaaagagaacacataaa 500

                                                                       
Query: 301 gaggcctttcatgtcttggatatagaagattaaatttgttgagaatatcagccttctatt 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggcctttcatgtcttggatatagaagattaaatttgttgagaatatcagccttctatt 560

                                                                       
Query: 361 ttatgggattaagactattgcaattaaaagttcttcacatttttaacaaagttattctag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatgggattaagactattgcaattaaaagttcttcacatttttaacaaagttattctag 620

                                                                       
Query: 421 agtttagtctaagtagaaatataagacatgccttagaattatgctatgtgtctgttgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttagtctaagtagaaatataagacatgccttagaattatgctatgtgtctgttgaag 680

                                                                       
Query: 481 aaagagaatatatctatcttgcccagcatcccttgcctagaggacagactccataaatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 aaagagaatatatctatcttgcccagcatcccttgcctagaggacagactctataaatat 740

                       
Query: 541 ttattgaataaa 552
           ||||||||||||
Sbjct: 741 ttattgaataaa 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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