BAC Information

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BAC

Clone NameMSMg01-080A20
Chromosome11 (Build37)
Map Location 96,285,174 - 96,285,543
singlet/doubletsinglet
Overlap genenone
Upstream geneSpop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242
Downstream geneOTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080A20.T7 (MSMg01no080_a20.b1)MSMg01-080A20.TJ (MSMg01no080_a20.g1)
ACCAG300987AG300988
length730713
length of high quality
(start - end)
373 (36 - 408)526 (65 - 590)
definitionCHROMAT_FILE: MSMg01no080_a20.b1 PHD_FILE: MSMg01no080_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:50 2005CHROMAT_FILE: MSMg01no080_a20.g1 PHD_FILE: MSMg01no080_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTATACGACTCCTATATTCAGAGAATCCGCGGAATTCCCTTC
CTAATACAACTCTGCCATAAAATAGTTACCACTTCTTCATACATATTAGG
TGACTTGCAAAAGGGGTTCTCATCCATTAGTTCCTTTGAATCTCAGAGCC
ACCCTGTGGCAAAAATTATAATTATACCCATGTTATGTGGAAGGGTAACA
AGGTCCAAGGAATTTCCCAGAATCAGAACCTATAAGTGACTATGGCTGGA
CTTGCACTTGGTAGCACTATACCACATAGTTGTGTCTCTTCATTCTTCAG
AGTAGGTGTGCTCTATTCGTCTTCTTCATCTCCTTTTTTTTTCTTTTTCT
TCTTTCTCCTCTTTCTCCTCTTCTTCTTCTTTTCCTTTTTTCTTTTCTTC
TTTTTCCCCCCACGCTCCCTCTTTACCCCTTTTTTTCCTCTTTTTTCCTT
CCCCCTTTTTCTTCCCCCATTCCTCCTCATTTTACCCCCCCACCCCCTCT
TTCCTTATTTCTTCTATCTTTTCTTTCTTTATTCCTTCCCTTACATTCCT
CCCTTTCTTTTTTTTTCCCCATTTTTTTTTTTTTTTTCCATTTATTTCCC
TTTCCTTCCCCCTTTTTTTTCCCCTTTTATTTTTCTTTCCCTACCACCCT
GCTCCCCCCCCTCTCTTTTTTTTCCCCCTTACCCATTTCCCCCTTTTCCC
CTTTTCTTTTTTCTTCCTCTCCCCCTTTTA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGGACATCAAGGCAACACAGAGAAACCCTGCTTCA
AAAAATAAAACAAGGGGTTGGAGAGATGGCTCAGCGGTTAAGAGCACTGA
CTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGATT
CACAACCATCTGTAATGGGATCCAATACCCTTTTCTGGTGTGTCTAAAAA
GAGCAACAGTGAACTCACATATGTAAAATAAGTAAATAAAAAAGACTAAT
AAAAACAAAAACAAAAGACAAGTTCTGCTCCCAGCACTCACATCAGGTGG
CTCACAACAGACAAAGTCAAGGGCTACAATGCTGCCTTCTGAACTCTGCA
GGCCCCTGCACTCATATGAGCTCGCTGTCATTTATACTCGTAAATCTAAA
ATAAAAAAATAACTTTAAAAAATTGAGACCCAGGGGCTGGCAAGATGGCT
CAGCAGGTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAGTGC
CAGCAACAATATGGTGGGCTCACAGCTACCTGTAATGAGACCTGACACCC
TCTTCTGGTGTGTCTGAAGTCCGCTACAGTGTAATTACATGTAATTATAA
ATAAATCTTATAAAAAAATATTGAGACCCATTCAGGTGGCGCTGGTATAC
ACCTTTTACCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_a20.b1 MSMg01no080_a20.b1 CHROMAT_FILE:
MSMg01no080_a20.b1 PHD_FILE: MSMg01no080_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:50 2005
         (373 letters)



>mm_chr11_96285063_96285836
          Length = 774

 Score =  654 bits (338), Expect = 0.0
 Identities = 362/370 (97%), Gaps = 1/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccttcctaata-caactctgccataaaatagttaccacttcttcatacatatta 63
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaattcccttcctaagaggaactctgccataaaatagttaccacttcttcatacatatta 422

                                                                       
Query: 64  ggtgacttgcaaaaggggttctcatccattagttcctttgaatctcagagccaccctgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggtgacttgcaaaaggggttctcatccattagttcctttgaatctcagagccaccctgtg 362

                                                                       
Query: 124 gcaaaaattataattatacccatgttatgtggaagggtaacaaggtccaaggaatttccc 183
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 361 gcaaaaattataattatacccatgttaagtggaagggtaccaaggtccaaggaatttccc 302

                                                                       
Query: 184 agaatcagaacctataagtgactatggctggacttgcacttggtagcactataccacata 243
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agaatcagaacctataagtggctatggctggacttgcacttggtagcactataccacata 242

                                                                       
Query: 244 gttgtgtctcttcattcttcagagtaggtgtgctctattcgtcttcttcatctccttttt 303
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 241 gttgtgtctcttcattcttcagagtaggtgtgctctaatcgtcttcttcatctccttttt 182

                                                                       
Query: 304 ttttctttttcttctttctcctctttctcctcttcttcttcttttccttttttcttttct 363
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttcctttttcttctttctcctctttctcctcttcttcttcttttccttttttcttttct 122

                     
Query: 364 tctttttccc 373
           ||||||||||
Sbjct: 121 tctttttccc 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 774
Length adjustment: 9
Effective length of query: 364
Effective length of database: 765
Effective search space:   278460
Effective search space used:   278460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)