BAC Information

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BAC

Clone NameMSMg01-080A24
Chromosome11 (Build37)
Map Location 17,917,344 - 18,058,470
singlet/doubletdoublet
Overlap genenone
Upstream gene1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748, Etaa1, LOC327871
Downstream geneLOC627696, LOC627716, LOC665796, Meis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080A24.T7 (MSMg01no080_a24.b1)MSMg01-080A24.TJ (MSMg01no080_a24.g1)
ACCAG300995AG300996
length689689
length of high quality
(start - end)
289 (68 - 356)505 (70 - 574)
definitionCHROMAT_FILE: MSMg01no080_a24.b1 PHD_FILE: MSMg01no080_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:51 2005CHROMAT_FILE: MSMg01no080_a24.g1 PHD_FILE: MSMg01no080_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,917,344 - 17,917,632)(18,057,966 - 18,058,470)
sequence
TATATTTGCGGCGCTAAACGACTCCTATTTTCAGAGGATCCGCGGAATTC
TCACTGGACCCCAAAACAGCATTTAAGCTAGACTGACTGGTTGGGAAGTC
CTAGCCATCCTTTTAGCTCTGCTGCCTATAGGACTGGGCAACAGGCATAT
ACGGCCACACTCATGCTTTTACTCTAGTCTGTAGGATCCAAGTTCAGTTC
TTCAAGCTTGTATAGCAGGAAGCTCTTAGCCAGTAAGCTATCTTCCCAGC
ATGCATTAGATTCTTGTTCTTGGAGATTATTTAAATTCTCATAGACTCTA
GTAGTTTGCTATCAATAAAATGAAAAGCTCAATGGTGCCTATATGGTGCT
ATCCTTGGAACAAATAGCACATTTTTTAACCAGCAAATAGTCTATTGATC
AATGGTTTCTAAGACACAGTATTTATAATAGGTATGGCTACAAATAGTTG
CCAATCTCTCTATAAAGATCTTGGAAGCACTATTCACCATCTGATATTAT
ATTGGAAGAAAGTGCCTTATTCTGAGATCTTGAATCATGATTTATTGTTC
CGTGTCTTTGTAATTCGTCTCTTATTCACTCCTGGCAGATCTGATGCCCT
GAGTGTTGTTTAAGTAGAGCTTTGCTTGACAGCCTGTATATCAAAGGTGG
CTCGAAACATGAGGAAGAGGGTCAATTGGACGGTACGTG
TGCTGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAACTAAGTTAAGGGAGGTCAGAGTACTCA
AAATTTAGTCACGTGAGTGCCTGTGAACCAGACTGGAATGTTCAGCCAGG
TCAGGGGGAGACAGGGTCAGATGTCAAAGGTTATTGAGAGAGTTCTTCAC
ACCGTGTTGCTTCAAACATCCGCCCTTCCCCAACCCCAGGCCCACACAAT
CAATGTCTACATTTTCAGATCTTTATGTTGTGTATATGCAAATTAATTTT
TGAAAGACAAGAACTGAGGGACTCATGAGGATGCATGAAACTGGGTTTCC
AGAAGACCCCAGCCTTCATCCTCAAGAAGGTGACCTTGGGTAAAAAAAGA
ATTAAACGGCCATGCTTCACTTTCTATATGTTAACTAGTGGGCTCTGAAC
TTCACAACTCTCCAACTCTGTTCCTTCCTCCAGTGGGCCTTAGCTGAAGG
GAGATGGTGATACAGTTATGGTTTTGGGAGTCTAATCTAAGGAAGGTTTC
AAGATGAACTGGAGGAGAGAGCAGAAAGAAAAACTAAACCTGCAACTTCA
GCTAAAAACAGTGTTGCTATTACAACATGAAATGATCCGAATATTGAAAG
GATTTCTTAATACAAAACCCGCTACCAGCATAGATACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_a24.b1 MSMg01no080_a24.b1 CHROMAT_FILE:
MSMg01no080_a24.b1 PHD_FILE: MSMg01no080_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:51 2005
         (289 letters)



>mm_chr11_17917144_17917832
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatttaagctagactgactggttgggaagtcctagccatccttttagctctgctgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatttaagctagactgactggttgggaagtcctagccatccttttagctctgctgcct 260

                                                                       
Query: 61  ataggactgggcaacaggcatatacggccacactcatgcttttactctagtctgtaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataggactgggcaacaggcatatacggccacactcatgcttttactctagtctgtaggat 320

                                                                       
Query: 121 ccaagttcagttcttcaagcttgtatagcaggaagctcttagccagtaagctatcttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagttcagttcttcaagcttgtatagcaggaagctcttagccagtaagctatcttccc 380

                                                                       
Query: 181 agcatgcattagattcttgttcttggagattatttaaattctcatagactctagtagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcatgcattagattcttgttcttggagattatttaaattctcatagactctagtagttt 440

                                                            
Query: 241 gctatcaataaaatgaaaagctcaatggtgcctatatggtgctatcctt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctatcaataaaatgaaaagctcaatggtgcctatatggtgctatcctt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no080_a24.g1 MSMg01no080_a24.g1 CHROMAT_FILE:
MSMg01no080_a24.g1 PHD_FILE: MSMg01no080_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:51 2005
         (505 letters)



>mm_chr11_18057766_18058670
          Length = 905

 Score =  977 bits (505), Expect = 0.0
 Identities = 505/505 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataactaagttaagggaggtcagagtactcaaaatttagtcacgtgagtgcctgtgaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ataactaagttaagggaggtcagagtactcaaaatttagtcacgtgagtgcctgtgaacc 646

                                                                       
Query: 61  agactggaatgttcagccaggtcagggggagacagggtcagatgtcaaaggttattgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agactggaatgttcagccaggtcagggggagacagggtcagatgtcaaaggttattgaga 586

                                                                       
Query: 121 gagttcttcacaccgtgttgcttcaaacatccgcccttccccaaccccaggcccacacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gagttcttcacaccgtgttgcttcaaacatccgcccttccccaaccccaggcccacacaa 526

                                                                       
Query: 181 tcaatgtctacattttcagatctttatgttgtgtatatgcaaattaatttttgaaagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcaatgtctacattttcagatctttatgttgtgtatatgcaaattaatttttgaaagaca 466

                                                                       
Query: 241 agaactgagggactcatgaggatgcatgaaactgggtttccagaagaccccagccttcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agaactgagggactcatgaggatgcatgaaactgggtttccagaagaccccagccttcat 406

                                                                       
Query: 301 cctcaagaaggtgaccttgggtaaaaaaagaattaaacggccatgcttcactttctatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cctcaagaaggtgaccttgggtaaaaaaagaattaaacggccatgcttcactttctatat 346

                                                                       
Query: 361 gttaactagtgggctctgaacttcacaactctccaactctgttccttcctccagtgggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gttaactagtgggctctgaacttcacaactctccaactctgttccttcctccagtgggcc 286

                                                                       
Query: 421 ttagctgaagggagatggtgatacagttatggttttgggagtctaatctaaggaaggttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttagctgaagggagatggtgatacagttatggttttgggagtctaatctaaggaaggttt 226

                                    
Query: 481 caagatgaactggaggagagagcag 505
           |||||||||||||||||||||||||
Sbjct: 225 caagatgaactggaggagagagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)