BAC Information

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BAC

Clone NameMSMg01-080B19
Chromosome11 (Build37)
Map Location 61,905,075 - 62,035,853
singlet/doubletdoublet
Overlap geneSpecc1
Upstream geneLOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558
Downstream geneAdora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080B19.T7 (MSMg01no080_b19.b1)MSMg01-080B19.TJ (MSMg01no080_b19.g1)
ACCAG301032AG301033
length705706
length of high quality
(start - end)
536 (39 - 574)608 (67 - 674)
definitionCHROMAT_FILE: MSMg01no080_b19.b1 PHD_FILE: MSMg01no080_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:55 2005CHROMAT_FILE: MSMg01no080_b19.g1 PHD_FILE: MSMg01no080_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,905,075 - 61,905,603)(62,035,301 - 62,035,853)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
CAACTCCCGAGACAGCAGCACTGAACATCAAGAGCGTTAATTAATTTGAT
AAAATCAGTCTTTTAAAAACTACATTCAAGGGGCTGGAGAGATGGCTCAG
TGCATTGACCGCTCTTGTTGGAGGAGTCGGATTGGGTTTGCAGCACCGAG
ATTGCAGCTTCCAGTTGTCTGTAACTTCAGCTCCAGGTGATCTGATGCAC
GTGGCACACTTATATACATGCAGTCAAAAAACTCATACACATAAAGTAAG
TCTTATAAAAGGTTTCATTCAGCCTCTTTAACTTCTATGGATGGGCAAAT
TCCTGTGAATCCTCCAGTACATAAGCACTTTCTTCTTACTGGTCAATAGC
GTATTTATGGATTGTTGTTATTATTCTAGGAATCTTATCCTGACTTCCTT
ATTGACTGAAGGGTCTTGGACATAATTTTTTGATTTATTTTTCTCCTCCT
TATATGAGTTTCTAGAACAATGTAAGTTAGCATATTCTCAACAGATATTT
GATTAATAGTAAATGTTGAAGCTGCAAATATGTTCACACATTCTTTTTCT
CTTGTCTCTACTTTCCCATGATTTCCATCATTTCAGTTATTTTCTTTGAT
ATGTGACACTCCATCTCTCACCAGATATTAACCATACTTTTGTTTCCATG
CTTCT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGGATGCCCTACAAAAGCTGAGGAGCAACTGGAT
GAAGAATGAGAACTAAGGACAAACTCGGATGCTAAAGTGAGAAGGGACTG
AGGAGAGGGCCGTTCCTCGGACCCTGTCCCTGTGGGTGTGGCCTCAGCAC
TGTCACCTGTCATCAGCTCAGACACCACTCAGCACAGAAAACCACGGGCT
TCCCCACATGGTTTAACTTCTCAAGGTCTTGCATTCTGCAGGTCTCTCTT
GTGCTTAGATGAGGGCAGAGGGGAAACACACGGCCATGGAGGCTTTTGAC
AGCCTCCAAATGATAGTTAGTAAAGAAGCACAAGACAAACAAAACCACAG
CAAAACCACAAAGTACCAAAGCCGGGCATGGTGTCTAATCTCAGCACCTG
GGAGGCAGAGGCAGGAAGATCAGGCATTCAAGACCAGCCATGAGATTCTG
TTTCATAAAATCCCCAACGCAAAGCAAACAAATAAACAAACAAACCCACC
CCCAAACACCCCAATAAAACCGGAGAAAATGTAAGGCACCGGCTGTGCTG
GTATTCTTAGCTGGTCAGTTTTCCATATTCCCTTTTGTACCCTGGAGCTC
TTCCCAGACCCTGAACCTCCACATGCAGCAGTGTGGTACCATGTCAGAGC
ATCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_b19.b1 MSMg01no080_b19.b1 CHROMAT_FILE:
MSMg01no080_b19.b1 PHD_FILE: MSMg01no080_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:55 2005
         (536 letters)



>mm_chr11_61904871_61905806
          Length = 936

 Score =  938 bits (485), Expect = 0.0
 Identities = 518/529 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaactcccgagacagcagcactgaacatcaagagcgttaattaatttgataa 64
           ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacaactcaggagacagcggcactgaacatcaagagcgttaattaatttgataa 264

                                                                       
Query: 65  aatcagtcttttaaaaactacattcaaggggctggagagatggctcagtgcattgaccgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatcagtcttttaaaaactacattcaaggggctggagagatggctcagtgcattgaccgc 324

                                                                       
Query: 125 tcttgttggaggagtcggattgggtttgcagcaccgagattgcagcttccagttgtctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttgttggaggagtcggattgggtttgcagcaccgagattgcagcttccagttgtctgt 384

                                                                       
Query: 185 aacttcagctccaggtgatctgatgcacgtggcacacttatatacatgcagtcaaaaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacttcagctccaggtgatctgatgcacgtggcacacttatatacatgcagtcaaaaaac 444

                                                                       
Query: 245 tcatacacataaagtaagtcttataaaaggtttcattcagcctctttaacttctatggat 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatacacataaaataagtcttataaaaggtttcattcagcctctttaacttctatggat 504

                                                                       
Query: 305 gggcaaattcctgtgaatcctccagtacataagcactttcttcttactggtcaatagcgt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 gggcaaattcctgtgaatcctccagtacataagcactttcttcttactggtcaatagcat 564

                                                                       
Query: 365 atttatggattgttgttattattctaggaatcttatcctgacttccttattgactgaagg 424
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 565 atttatggattgttgttattattcttggattcttatcctgacttccttattgactgaagg 624

                                                                       
Query: 425 gtcttggacataattttttgatttatttttctcctccttatatgagtttctagaacaatg 484
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 625 gtcttggacataatttcttgatttatttttctcctccttatatgagtttctaaaacaatg 684

                                                            
Query: 485 taagttagcatattctcaacagatatttgattaatagtaaatgttgaag 533
           |||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 685 taagttagtatattctcaacagatatttgattactagtaaatgttgaag 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no080_b19.g1 MSMg01no080_b19.g1 CHROMAT_FILE:
MSMg01no080_b19.g1 PHD_FILE: MSMg01no080_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:55 2005
         (608 letters)



>mm_chr11_62035301_62036308
          Length = 1008

 Score = 1046 bits (541), Expect = 0.0
 Identities = 550/553 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggatgccctacaaaagctgaggagcaactggatgaagaatgagaactaaggacaaactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tggatgccctacaaaagctgaggagcaactggatgaagaatgagaactaaggacaaactc 494

                                                                       
Query: 61  ggatgctaaagtgagaagggactgaggagagggccgttcctcggaccctgtccctgtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 493 ggatgctaaagtgagaagggactgaggagagggccgttcctcggaccctgtccctgtcgg 434

                                                                       
Query: 121 tgtggcctcagcactgtcacctgtcatcagctcagacaccactcagcacagaaaaccacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgtggcctcagcactgtcacctgtcatcagctcagacaccactcagcacagaaaaccacg 374

                                                                       
Query: 181 ggcttccccacatggtttaacttctcaaggtcttgcattctgcaggtctctcttgtgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcttccccacatggtttaacttctcaaggtcttgcattctgcaggtctctcttgtgctt 314

                                                                       
Query: 241 agatgagggcagaggggaaacacacggccatggaggcttttgacagcctccaaatgatag 300
           || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 313 agctgagggcagaggggaaacacacggccatggaggcttttgacaacctccaaatgatag 254

                                                                       
Query: 301 ttagtaaagaagcacaagacaaacaaaaccacagcaaaaccacaaagtaccaaagccggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttagtaaagaagcacaagacaaacaaaaccacagcaaaaccacaaagtaccaaagccggg 194

                                                                       
Query: 361 catggtgtctaatctcagcacctgggaggcagaggcaggaagatcaggcattcaagacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 catggtgtctaatctcagcacctgggaggcagaggcaggaagatcaggcattcaagacca 134

                                                                       
Query: 421 gccatgagattctgtttcataaaatccccaacgcaaagcaaacaaataaacaaacaaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gccatgagattctgtttcataaaatccccaacgcaaagcaaacaaataaacaaacaaacc 74

                                                                       
Query: 481 cacccccaaacaccccaataaaaccggagaaaatgtaaggcaccggctgtgctggtattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  cacccccaaacaccccaataaaaccggagaaaatgtaaggcaccggctgtgctggtattc 14

                        
Query: 541 ttagctggtcagt 553
           |||||||||||||
Sbjct: 13  ttagctggtcagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)