Query= MSMg01no080_d01.b1 MSMg01no080_d01.b1 CHROMAT_FILE:
MSMg01no080_d01.b1 PHD_FILE: MSMg01no080_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:01 2005
(480 letters)
>mm_chr11_111731734_111732613
Length = 880
Score = 886 bits (458), Expect = 0.0
Identities = 471/476 (98%), Gaps = 2/476 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtacccaggagccacacaatagaaagagagatgcaactcctgtaagctgtcac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaattcagtacccaggagccacacaatagaaagagagatgcaactcctgtaagctgtcac 471
Query: 65 atttctcctacgtagctctttggcacacactccactcttcacatgtaataagtctttaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 atttctcctacgtagctctttggcacacactccactcttcacatgtaataagtctttaaa 411
Query: 125 attatagtttgggacttggagaaattaatatgaaagtgggaaaagcaaatgacccattag 184
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 410 attgcagtttgggacttggagaaattcatatgaaagtgggaaaagcaaatgacccattag 351
Query: 185 tggttacaatttggagttagggaaaatcaaaatataaaatataaaaagaaaagcattttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tggttacaatttggagttagggaaaatcaaaatataaaatataaaaagaaaagcattttg 291
Query: 245 taaatgtcagctgatttatatctccatagtaaggtacttacatagcatgcaatccacagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 taaatgtcagctgatttatatctccatagtaaggtacttacatagcatgcaatccacagc 231
Query: 305 aggtcccagcaagctcaaacccccagtattatataaacaaataaataaaaaaaaaaatca 364
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 230 aggtcccagcaagctcaaacccccagtattatataaacaaataaat--aaaaaaaaatca 173
Query: 365 caaaaggaaagttagccaaaggataccaaaatagctctttggaagagatacttccacatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 caaaaggaaagttagccaaaggataccaaaatagctctttggaagagatacttccacatt 113
Query: 425 tgaactcaaacccttgtaaaagtgaattggatagaaaatctggaagaaggttccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tgaactcaaacccttgtaaaagtgaattggatagaaaatctggaagaaggttccag 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_d01.g1 MSMg01no080_d01.g1 CHROMAT_FILE:
MSMg01no080_d01.g1 PHD_FILE: MSMg01no080_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:01 2005
(411 letters)
>mm_chr11_111613014_111613826
Length = 813
Score = 741 bits (383), Expect = 0.0
Identities = 405/413 (98%), Gaps = 2/413 (0%)
Strand = Plus / Plus
Query: 1 agccccccattatctaggaacatgctgccaacccagtgctagggaggtagagacagggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccccccattatctaggaacatgctgccaacccagtgctagggaggtagagacagggta 260
Query: 61 gcccctggggttcactggctagctagtctagatgagctccaggttcagtgggagaggaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccctggggttcactggctagctagtctagatgagctccaggttcagtgggagaggaaa 320
Query: 121 tatggcagacatgtctctggcctctgtaatcatcagcatacgtgtcaacacaagcaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatggcagacatgtctctggcctctgtaatcatcagcatacgtgtcaacacaagcaaggc 380
Query: 181 aggtggtgggcttcttcctaagtgttgt--gtcaatatacaagaagtgacacctgcttta 238
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 381 aggtggtgggcttcttcctaagtgttgtaagtcaatatataagaagtgacacctgcttta 440
Query: 239 ccactcgtaaggcacccgtaggccagtcacagtgcttcttgctcagttggcttatgctga 298
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ccactcgtaaggcacccgtaggccagtcacagtgcttcttgctcatttggcttatgctga 500
Query: 299 ccatccagcaccacagaccccaagagtagagagtggcatgtacgagggcaccaattgtct 358
|||||||||||||||||||||| ||||||||||||||||||| || |||||||||| |||
Sbjct: 501 ccatccagcaccacagaccccatgagtagagagtggcatgtatgacggcaccaattctct 560
Query: 359 ttgatgcttttattggaagtaagtaaatcagggacgctcatggatcctgcact 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgatgcttttattggaagtaagtaaatcagggacgctcatggatcctgcact 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 813
Length adjustment: 9
Effective length of query: 402
Effective length of database: 804
Effective search space: 323208
Effective search space used: 323208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
