BAC Information

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BAC

Clone NameMSMg01-080D06
Chromosome11 (Build37)
Map Location 101,238,778 - 101,238,877
singlet/doubletsinglet
Overlap geneG6pc
Upstream geneJup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949
Downstream geneAarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080D06.T7 (MSMg01no080_d06.b1)MSMg01-080D06.TJ (MSMg01no080_d06.g1)
ACCAG301102AG301103
length707714
length of high quality
(start - end)		95 (48 - 142)100 (72 - 171)
definitionCHROMAT_FILE: MSMg01no080_d06.b1 PHD_FILE: MSMg01no080_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:02 2005CHROMAT_FILE: MSMg01no080_d06.g1 PHD_FILE: MSMg01no080_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCATGTATATCGGCTGTAGCCATCGTTCTTGGTAAAGTTGTA
ACATAGCTTATCTGTGTATAAGAAGTCACGTAGCCGCTGGTCATGGCAGT
GCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGA
GTTCAAGGCCAGTCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTA
TCCATAGAAACCCTGTTCTTGAAACAAAAATCTCATATCCATGTTGTACA
GAGGTTCCGTTGGCCTCTGGTGCCCTAGGCTGAATGTACGCTGAAAGCCG
TTGCGCACCGCTCTGTTTTGTTTCCCCCTCCCCTCTTCTTGCCCCCGTTC
ATTCTTACGCGCTCTTCCCCCTCTTTTCCTGATATTATTCCGTTCTCCCT
TTTTACCCCCCTTCCGTTTTACCCTACCCCCCCTCTGTCCCTTTATTTTT
CCCCTTTCCACCACCCTTTCCCTTCCCCGCTTTCTCACCCTCTTCCCCTC
TTTCCTATCCATTTTTTCCCCTCTTACCCCCCCATTACCCTCCATTTTCC
CCCCTTTCCCCTTCCCCCTTCTCTTTTTTTTTTTCCCCCCCCTCTCCCCC
CCCTTCTTTTTTTTTTCTTCCCCTTTCTCCTTTTTTCTTCCCCCCCCTCC
CTTTTTG

AATAATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCACTTGTTCCCTGGCCCTGCTGCTGGA
CCCTGCTGTGTCTGGCAGGCAACTGTTTGTTGGTGCTTTTGTAGGGTTAA
GTTAAACTCTGAGATCTTGGGCAAAATGGCAAGGAGACCCAGGATTCCTC
TCTCTAAAGGTCACTCCGATGTTATTTTTGATTCCTGGGGCACAAATATG
ACTCCTTTCCCTAGCCCAAGTCAGCCAAGAGCTCTCATTCTTATAGGACA
AGGTAGTCCCTTGGTGTTTGTCCTCCAGCCTCGGCTGATTTGTAGAGTAC
TTCCTCCAAAAATACAAAACGCCAAAGCTATTTATTATTAACTCTTCGCT
TTTTGTTTCTTATGATGTATATAACTTCACCCACTTTAAGCATTTTGCTC
CTTATACCTTTGATAATATAACTATATGCGCACCACTTCCTTTATTGCCC
CCCTTTATTTTTTATTTGCAGTCTTGTTTATTCATCCCATTCCTATTTCG
CTCTTACTAATTTCCCTTCTTCGTCTCACCGTCTTCGCCTCTTTTTCCCC
ATTTCCCCCTTTTTATTTCTCTTCCCATTCTCTCCTTCCTCCCCCTCCCT
TTTCCCCCTCCCCCTCTCCCTTATTTTTATCCCTCTAATTTACAATAACT
TTTTTTTTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_d06.g1 MSMg01no080_d06.g1 CHROMAT_FILE:
MSMg01no080_d06.g1 PHD_FILE: MSMg01no080_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:02 2005
         (100 letters)



>mm_chr11_101238578_101239077
          Length = 500

 Score =  186 bits (96), Expect = 4e-52
 Identities = 99/100 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccacttgttccctggccctgctgctggaccctgctgtgtctggcaggcaactgtttgtt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tccacttgttccctggccctgctgctggaccctgctgtgtctggtaggcaactgtttgtt 260

                                                   
Query: 61  ggtgcttttgtagggttaagttaaactctgagatcttggg 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgcttttgtagggttaagttaaactctgagatcttggg 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 500
Length adjustment: 8
Effective length of query: 92
Effective length of database: 492
Effective search space:    45264
Effective search space used:    45264
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)


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