BAC Information

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BAC

Clone NameMSMg01-080I20
Chromosome11 (Build37)
Map Location 53,167,195 - 53,167,482
singlet/doubletsinglet
Overlap geneAff4, LOC100040576
Upstream geneVdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10
Downstream geneLeap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080I20.T7 (MSMg01no080_i20.b1)MSMg01-080I20.TJ (MSMg01no080_i20.g1)
ACCAG301361AG301362
length716728
length of high quality
(start - end)
364 (63 - 426)282 (65 - 346)
definitionCHROMAT_FILE: MSMg01no080_i20.b1 PHD_FILE: MSMg01no080_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:29 2005CHROMAT_FILE: MSMg01no080_i20.g1 PHD_FILE: MSMg01no080_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTG
TTTCTTCCTTTCAGAGGAACTAAAAAAAGAAAAATATGAGGACTACAGAA
AGCTGCAAAATCTTATTTATAACATGTAGCAAAGATTTTTATCTAGAATG
TTTGTGGAATCTAGACATGCTTGTAATTTGGGAGGCCAAATTAAAAGCTG
GGTATAGTAGTACAAACCTTTAATCTCAGCACTTGAAAGGTAGAGACAGG
TGGATCTCTATGAGTTCAATGCCAACCTGGTCTACATACTGCAAGTTTCA
ATCCAGTTGTGGATACAAAATGAGATCCTGTCTCAAAAACAAACAAAACA
ATAACCTTTGATTTTTATGAAAGGCACTACAAAAAAGGGGGAAGTTTCCA
TACATTTCGCACTCCATTTTAGGCCAATACACAGTCAAGAAGAAGAAATA
CCTGTTAAACACCTGTTTTCTTTGCTCTTTTCAGGTACACATAAAACCAT
GACTTCTACCTTACTACCTCAAAAATAAATAATTAACTAAATAAATAAGT
AGAGCCATAGCTTTTAGTACGCTTCATCTTCCATAACACTTTCTGAAGCT
AATCCCCACTTCCCTCCTTCCAGATACTGATCACTCACTTGCTCATCCAA
CCCTTAGGTTATCTGCCAAATCTTACATCGGAAATATGAATTATTTCCAC
CCTCCAACCGCTATCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTGTCTAGATCTGGATATTGTTTTTTAACCAGCCT
ATTTGGTTTCTTGAATTCTTTATCTATTTTGGAAATTTCCCCTCTGTTGG
ACATGGGGTTGGTGAAAATCTTTTCCCATTCTGTAGGCTGCCATTTTGTC
CTATGATAGTGTCTTCTGCCTTACAGAAACTAGAGGCTTCATCCAGCAAC
TGATGGAAACAGATGCAGAGACCCACAGCCAAACATTAGGGGGAGCTTGG
GGAATCCTGTGGTAGAGGAGGAGGAAGGATTGTAGGAGCCAGAGAGGTCT
AGGACACCACACGACCACCCTCATAACCTGGACTAATAGGGCTCATTGAG
ACTGAACCCCCCCCCAGCAGCCTGCATGTCATTGACTTCGGCCCTCTGCA
CAGATGTTACAGCTTTATAGTTTGGCCCCGTGTCACTCCTATTATCCCCA
GTAGTTTTCTGCCCGAATTTGTTCCCCCTTCTCCTCCCTTCTTTTTGTTC
CATCCTTCTCTTATCTCTTCCGTTTGTTTCTTATTCCTCCTCTATTTTTG
ACCCTGTTTTTTCTTCCTTTTTTTCCTCGCTTTTTTTTTTTTTTTCCTTG
CTATTTATTCTTTTTTATCTATTGCCTTCCCTCCTCTTTATTTTTCCTTC
CGCCCCTCTTTTTTCCCCTTATGTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_i20.b1 MSMg01no080_i20.b1 CHROMAT_FILE:
MSMg01no080_i20.b1 PHD_FILE: MSMg01no080_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:29 2005
         (364 letters)



>mm_chr11_53167149_53167913
          Length = 765

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggaactaaaaaaag-aaaaatatgaggactacagaaagctgcaaaatcttatttata 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agaggaactaaaaaaagtaaaaatatgaggactacagaaagctgcaaaatcttatttata 275

                                                                       
Query: 60  acatgtagcaaagatttttatctagaatgtttgtggaatctagacatgcttgtaatttgg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 acatgtagcaaagatttttatctagaatgtttgtggaatctagacatgcttgtaatttgg 215

                                                                       
Query: 120 gaggccaaattaaaagctgggtatagtagtacaaacctttaatctcagcacttgaaaggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaggccaaattaaaagctgggtatagtagtacaaacctttaatctcagcacttgaaaggt 155

                                                                       
Query: 180 agagacaggtggatctctatgagttcaatgccaacctggtctacatactgcaagtttcaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 154 agagacaggtggatctctatgagttcaatgccaacctggtctacatacagcaagtttcaa 95

                                                           
Query: 240 tccagttgtggatacaaaatgagatcctgtctcaaaaacaaacaaaac 287
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  tccagttgtggatacaaaatgagatcctgtctcaaaaacaaacaaaac 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 765
Length adjustment: 9
Effective length of query: 355
Effective length of database: 756
Effective search space:   268380
Effective search space used:   268380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)