BAC Information

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BAC

Clone NameMSMg01-080N03
Chromosome11 (Build37)
Map Location 79,890,754 - 79,891,117
singlet/doubletsinglet
Overlap geneCrlf3
Upstream geneKsr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12
Downstream geneAtad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080N03.T7 (MSMg01no080_n03.b1)MSMg01-080N03.TJ (MSMg01no080_n03.g1)
ACCAG301566AG301567
length725685
length of high quality
(start - end)
74 (45 - 118)345 (77 - 421)
definitionCHROMAT_FILE: MSMg01no080_n03.b1 PHD_FILE: MSMg01no080_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:50 2005CHROMAT_FILE: MSMg01no080_n03.g1 PHD_FILE: MSMg01no080_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATCATATTTGCGGCGTAATACACTCCTATTCGGAGAGGATCCGCGGA
ATTCAAGGTCTCCTTGGCTATACAGTGAGTTCATGAGTTCAAGGCCACCC
CGAGATAGATGAGACCTCTGCCTCATAAAGTAAATGGGATATGCGGTTTC
TCCTCTTCTTTTTGGTTCTTTGTTTTTTCCTCCGCCTCTTTTTTTAGTTA
CAACCCTTTTGATCCCCATGCCTCACCTTCCGGTGGGAAGGTGCCCGCAA
ATCCAGGGGCCCTTTTTTTGGAAGGCTTAAGGGTCCCGCCCTGTGATTTC
TTTTAGAAGTTTCCATTTCAGTGCCCGATGATTTTATATGGGGAGGCCGG
TCTGGATATGTTCTGTTTTGTCTCGGCCCGCCCCCTCCTTTTACCCCTTC
TTTTCTCTCCCCACCCCTCCTTTTTCTTTCCTCCCCCTCCTTTTTTTTTC
CTCTCCCCCCCTCTTTTTCTTTATCTCCCTCTCCTTTTTTTCCCTCCCTC
TTTCTTTTTTTTCCATCTTTTCGCCCCTTCTTAACTCCCCTCTCTCCCCT
CTTCTCTTTTGTTTCATTCCTTCCCCCATCTTCCTCTCTCCTCTCCTTTT
CCCTCTCTCCTTCTTCTTCCCTCTTCTCCCTCTCCATTCGCTCTTTCCTT
TCTCTTTTCTCTCTTCTCCTCCTCCTCTGCTTTTCACCCCCCTCTTTTTT
CCCTGTTACTCACCTCTTTTCTTTN
NCCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTTGGCTACACGACA
CCCTGTTTAAAGGAAAGAAGCTGAGGAAAAAGAAGGGAAAGAGAGGTCCA
GAACAGGTAAAGCCCTAAAAATGGACGGTAAGCTTCTATTAGGTTCGTCA
GAGCGACACTGAATACAGGGTATTTCTAGAGACTAATATAACATTCTAGA
ATTCATACATCATGATGTTTAATTAAACATTTAATTGTTATTTTATGCTA
CAGATTTGGGTGTTTTGCCTCTATGTGTATGTGTGTGTACACAATGTGTG
TACAATGTGTGTGCCTGGTGACGATGGAGGCCAGAGAGGGTGTAGAACTG
GAGTTACTGGGGTCTGTGAGCTGCCATGTATGTGGTTGCCGGGAATTGAA
CCCCCATCCTCTGGAAGAACAGCCAGTTCTCTTATCCTCTGAGCCGTCCC
TCTAGCCCTATGGCTAAACAAATTTTATAAGCAAGCTAAAAAACACTGAA
TGAAAGCTGGGCATGGTGGCACATGGGAGGCATAGGCAGGCGGATTTCTG
AGTTCTAGGCCAGTTTGTTCTACCCAGTGAGTTCCATGGACGCCCGGGAT
TAATCGTAGAACCCCTGTCTCGAAAACATTATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_n03.g1 MSMg01no080_n03.g1 CHROMAT_FILE:
MSMg01no080_n03.g1 PHD_FILE: MSMg01no080_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:50 2005
         (345 letters)



>mm_chr11_79890554_79891298
          Length = 745

 Score =  607 bits (314), Expect = e-178
 Identities = 343/364 (94%), Gaps = 19/364 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagccttggctacacgacaccctgtttaaaggaaagaagctgaggaaaaagaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccagccttggctacacgacaccctgtttaaaggaaagaagctgaggaaaaagaagg 260

                                                                       
Query: 61  gaaagagaggtccagaacaggtaaagccctaaaaatggacggtaagcttctattaggttc 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gaaagagaggtccagaacaggtaaagccctaaaaatggacggtaggcttctattaggttc 320

                                                                       
Query: 121 gtcagagcgacactgaatacagggtatttctagagactaatataacattctagaattcat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagagcaacactgaatacagggtatttctagagactaatataacattctagaattcat 380

                                                                       
Query: 181 acatcatgatg-----------tttaattaaacatttaa--------ttgttattttatg 221
           |||||||||||           |||||||||||||||||        |||||||||||||
Sbjct: 381 acatcatgatggctatataatgtttaattaaacatttaaacatttaattgttattttatg 440

                                                                       
Query: 222 ctacagatttgggtgttttgcctctatgtgtatgtgtgtgtacacaatgtgtgtacaatg 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacagatttgggtgttttgcctctatgtgtatgtgtgtgtacacaatgtgtgtacaatg 500

                                                                       
Query: 282 tgtgtgcctggtgacgatggaggccagagagggtgtagaactggagttactggggtctgt 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtgcctggtgacgatggaggccagagagggtgtagaactggagttactggggtctgt 560

               
Query: 342 gagc 345
           ||||
Sbjct: 561 gagc 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)