Query= MSMg01no080_n22.b1 MSMg01no080_n22.b1 CHROMAT_FILE:
MSMg01no080_n22.b1 PHD_FILE: MSMg01no080_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:54 2005
(536 letters)
>mm_chr11_29982261_29983192
Length = 932
Score = 969 bits (501), Expect = 0.0
Identities = 519/527 (98%), Gaps = 4/527 (0%)
Strand = Plus / Plus
Query: 10 ggaattctagacctatgtctggttatcttgagtgaatgatatcactgggttctggttatc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaattctagacctatgtctggttatcttgagtgaatgatatcactgggttctggttatc 269
Query: 70 aggtgcagccttggttgtaatatgtaaccatttaaattatctaatatttataccaataaa 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aggtgcagccttggttgtaatatgtaaccatttaaattatctaatatttataccaataaa 329
Query: 130 gatatgagaggcataaactggggtaaaaccctgctatgtcagccaggtgaatttattttc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gatatgagaggcataaactggggtaaaaccctgctatgtcagccaggtgaatttattttc 389
Query: 190 ttaactatagtcaaactatctatttataagcctggccctataactaaactattagctctc 249
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttaactatagtcaaactat----ttataagcctggccctataactaaactattagctctc 445
Query: 250 tagaaatgtctatctatgtcattctaccaagctagtctacctttctcttgagttcctcca 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tagaaatgtctatctatgtcattctaccaagctagtctacctttctcttgagttcctcca 505
Query: 310 aatccaagaggccttcttggttctcttagaatactgttttacctgtgtcctgccagaagc 369
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 506 aatccgagaggccttcttggttctcttagaatacggttttacctgtgtcctgccagaagc 565
Query: 370 ttctcgtggttcctacaagcccgaagaggaaatccctctcttacctgaagctcctttcat 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 566 ttctcgtggttcctacaagcccgaagaggaaatccctctcttacctgaagctccttccat 625
Query: 430 taacgcccttccaagccaaatgtgagacctatcaaaggtccaattgcttatcaaagaagt 489
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 taaggcccttccaagccaaatgtgagacctatcaaaggtccaattgcttatcaaagaagt 685
Query: 490 ctctagatcctctaggctgaaccatgcctttgttatggtggtggtgg 536
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctctagatcctctaggctgaaccatgcctttgttatggtggtggtgg 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 932
Length adjustment: 10
Effective length of query: 526
Effective length of database: 922
Effective search space: 484972
Effective search space used: 484972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_n22.g1 MSMg01no080_n22.g1 CHROMAT_FILE:
MSMg01no080_n22.g1 PHD_FILE: MSMg01no080_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:54 2005
(542 letters)
>mm_chr11_30123802_30124743
Length = 942
Score = 926 bits (479), Expect = 0.0
Identities = 488/495 (98%), Gaps = 7/495 (1%)
Strand = Plus / Minus
Query: 53 tgaacctaaggttcaggaccagaaacttcctgtaattgctggaccattttcccaacctca 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 tgaacctaaggttcaggaccagaaacttcctgtaattgctggaccattttcccaacctca 883
Query: 113 ataagtccttaagctatgatgacaagactggctgaatgttttaatatagaagtgactaag 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 ataagtccttaagctatgatgacaagactggctgaatgttttaatatagaagtgactaag 823
Query: 173 ccactgggtttcttgctggcatctttttaagggtaatttcactccttatagaacctggct 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ccactgggtttcttgctggcatctttttaagggtaatttcactccttatagaacctggct 763
Query: 233 gaatttgcttacctt-------aaaaaaaaaacaagatttgtttcaagtaatatgcatat 285
||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaatttgcttaccttaaaaaaaaaaaaaaaaacaagatttgtttcaagtaatatgcatat 703
Query: 286 gccaattcccagtggccctttgtatctggtaggaaagtgatctctgaacattgggaatga 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gccaattcccagtggccctttgtatctggtaggaaagtgatctctgaacattgggaatga 643
Query: 346 aggtttttgcagttgctttcattaggatattgtaggcagaggatggtcaacccttcagtt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aggtttttgcagttgctttcattaggatattgtaggcagaggatggtcaacccttcagtt 583
Query: 406 gtcctccgtagcagacagtgtagggaggagcagccctctgttggtttctacatcacagac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gtcctccgtagcagacagtgtagggaggagcagccctctgttggtttctacatcacagac 523
Query: 466 tgttgtatgaaattctaattttttgacaggaagcagtatgttcctcaccttcctgtcttc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgttgtatgaaattctaattttttgacaggaagcagtatgttcctcaccttcctgtcttc 463
Query: 526 tcaggctttctttca 540
|||||||||||||||
Sbjct: 462 tcaggctttctttca 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
