BAC Information

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BAC

Clone NameMSMg01-081B01
Chromosome11 (Build37)
Map Location 7,986,105 - 7,986,484
singlet/doubletsinglet
Overlap genenone
Upstream geneAdcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081B01.T7 (MSMg01no081_b01.b1)MSMg01-081B01.TJ (MSMg01no081_b01.g1)
ACCAG301754AG301755
length733775
length of high quality
(start - end)
399 (43 - 441)157 (72 - 228)
definitionCHROMAT_FILE: MSMg01no081_b01.b1 PHD_FILE: MSMg01no081_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:09 2005CHROMAT_FILE: MSMg01no081_b01.g1 PHD_FILE: MSMg01no081_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCCAGTTGCTCATCCTTTCCTTACATGAATCCCAAGGCTTGCTTTGTCT
GCTCTCTAAGATTGGATACACTTCCAATCCCAAGGTAAAGAGCCTCTCTG
CCCAAGCTCATGCATCTTCTATCACAATCTTTTAAAAAACCAAACCAAAC
CAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAAT
CAAACCCAACCCATGTTCAGCAGAGATGTGCTTGCTTTCCTCTGATTCTG
TGGCATGGAATGATAGCACAAGATGATTCATTTTTATAATTACCTCAATA
TGGAATTTATAATCACCTCCTGACCTAACTAAGAAAAGGTTCCCATTGAT
ACTAATGATTACTGGATAGAAGGAGGATCTATTTCTAGCCTTTGGAAGAA
GCATCAGATTGCTTTCTGCTATGACTGGGTTGCTTTTACTCCAATCTGCA
ATGAATGAGGCTTCCAGAATGTCGGTATTCTTAATCCACCCTTTAAAAAA
AGTTATTATGACTATCCTAATAACTACCAAAATGCCTATTTCCCAAAGGA
GCTAAGGTGACAAAAAGCTTTTTAATGTCCCTTGGTCACTTGAATGCCTT
TGGAGAAATTTTCTATCTTAAAAATGGCATCCTTTAAACTGGGGTCCTTT
ATGGGTCACTAGGTGGGAAATTTGGAATCTGAC
TTGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCTTGTCTGCTCTGGATCCAGAGTGAT
ACCCAGCTGGGCCAAACTCTCCTGGATTCTTCACATGCTAGCTATGCCTC
CCTGTCCTCCACTTTCCTCAGGCATGGCAGCTCTCCTGTCCTCCTGGAGT
GGTGGATCTCCTTTTCTTCCTCCCTGTTCCCTAAAGCCTTGGGGTAATTC
TCCTAAAAGTAAACCCCCCCCCTTCTCTGCTTCTTTTCCCCCCANAGAAG
CTTTGCTCGTTTGGGTCCCCTCGCTATTTACGCTCTCTATTTTTTTCTCT
CATTTTTTTTTTTCTCACCTATTTTTTTCTTATTCTTTTCTATTTATTCT
TCTTCTTTATCCTCACTCCTCCTCCTCCTCCCCTCCCTCCCTCCCCTCCC
CACCCCTCTTCACTTTCCTCGTTTTTTATTATCCAAAATTTATTTTATAT
TTATTTTTTTTCCTTCTTTTTCTTCCTTCTTTTCCCTCGTTCTTTTCGTT
TCTTATTTTTTTTTCTTATCTCGACTGTCTATTTCTGTTCTTACCTCTTC
ATATACTTATTCTGTCTTTCTACTCCCTTCCACCCTGCTTGTCCTCCCTC
TCCTCCTCTTCTCTTTTCCCCTTATTTTTCTTAGTTTTTCTGTTCCGTCG
TTGTCTTTTTCTGTTTGCACCTCTATCTTTCTCCCGCTCCTCTCTGTCGT
TTCTCTCTACTCTGTTTTCTCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_b01.b1 MSMg01no081_b01.b1 CHROMAT_FILE:
MSMg01no081_b01.b1 PHD_FILE: MSMg01no081_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:09 2005
         (399 letters)



>mm_chr11_7985686_7986484
          Length = 799

 Score =  687 bits (355), Expect = 0.0
 Identities = 378/395 (95%), Gaps = 15/395 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattccagttgctcatcctttccttacatgaatcccaaggcttgctttgtctgctctc 64
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ggaattccagttgctcattttttccttacatgaatcccaaggcttgctttgtctgctctc 740

                                                                       
Query: 65  taagattggatacacttccaatcccaaggtaaagagcctctctgcccaagctcatgcatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 taagattggatacacttccaatcccaaggtaaagagcctctctgcccaagctcatgcatc 680

                                                                       
Query: 125 ttctatcacaatcttttaaaaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaacc 184
           ||||||||||||||||||||               |||||||||||||||||||||||||
Sbjct: 679 ttctatcacaatcttttaaa---------------aaaccaaaccaaaccaaaccaaacc 635

                                                                       
Query: 185 aaaccaaaccaaaccaaaccaaatcaaacccaacccatgttcagcagagatgtgcttgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aaaccaaaccaaaccaaaccaaatcaaacccaacccatgttcagcagagatgtgcttgct 575

                                                                       
Query: 245 ttcctctgattctgtggcatggaatgatagcacaagatgattcatttttataattacctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttcctctgattctgtggcatggaatgatagcacaagatgattcatttttataattacctc 515

                                                                       
Query: 305 aatatggaatttataatcacctcctgacctaactaagaaaaggttcccattgatactaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aatatggaatttataatcacctcctgacctaactaagaaaaggttcccattgatactaat 455

                                              
Query: 365 gattactggatagaaggaggatctatttctagcct 399
           |||||||||||||||||||||||||||||||||||
Sbjct: 454 gattactggatagaaggaggatctatttctagcct 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)