BAC Information

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BAC

Clone NameMSMg01-081J07
Chromosome11 (Build37)
Map Location 73,828,850 - 73,829,033
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398
Downstream geneOlfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081J07.T7 (MSMg01no081_j07.b1)MSMg01-081J07.TJ (MSMg01no081_j07.g1)
ACCAG302150AG302151
length776758
length of high quality
(start - end)
190 (43 - 232)---
definitionCHROMAT_FILE: MSMg01no081_j07.b1 PHD_FILE: MSMg01no081_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:50 2005CHROMAT_FILE: MSMg01no081_j07.g1 PHD_FILE: MSMg01no081_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGAGATCCGCGGA
ATTCCTTCCTGTATCGGGGACCTCAAACACATACAAGAATTGGTTATCCT
CACAATAGTCATTCACCTACTGCACAAAGGGGTACACCTTGCCTAACAGA
TAAATAGCATAGTTTCTTGTGTTCACTGCAACATAAAAACGTGACTGTCT
TTTCTGCCCCAGTAGGCTATGTAAAACTCTGATAACTATCCAGCAAAGTG
AAAGCTTTCCACCCAGTTCCAGCTTGATTCCTCTATGTTACAAAAATAAA
GTACATGTTGTCTTCACAATAATACCATCTTATCTAATTATGGTGTGCCT
TTATATTATTGATTTCTATCCTGCCTGATCTATAAAACCTCCGACAACTA
TCTGATCTAACTCTCTTAAATAAAAACACTACATCCTGAACTGTATATAT
TTGTCTAAATACTCTATTAATTCTTAAAACTTATATTTCCCTCGTCATCT
TATTGCTATTTTCAATTAAATATATTTTTTTTAACTTTTTTTGTAGTTTG
TAATTCATAATATCAACTATTCTATACGTATTTATTCTACCGCCCATTTA
CATTATTGTCTAAAAATTTCCCAGTATCCTTCTGTACTTCTACTCCTCCG
TACAAAATAATTTTTGTTTTACATTTAAAATTCATCCTCTAAAGTTTTAT
TCATATTCTTTTTTCTTCATTTCACAATTCTCCTACGCCTTTAATTGAAC
TATATTTATTGTATTATATTATTTAG
TACACGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAACTTTTATCATGAAT
GGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCAT
GTGTTTTTTGTCATTGAGTCTGCTTATATAATGGATTACATTGATGGATT
CTTGTATATTAAACCATCCCTGCATCCCTGGAATAAAAACTACTTGATCA
GGATGCATGATTGTTTTAACGTGTTCCTGGATTCCCTTATCTAAATATAT
ACTAAACATTTCCCCCTCTTTTTTCTTTATTATTATTTGTGCTGAACTCC
CCCACATTCGCCGCGCCTCCCCGAGTTTCATCTATTTTATTAATATATAT
CTTCTTAAAAAAAACTATCTTAACTACCATCCAACATCTCATCCAAAAAA
AACATTATAAATATTTTATCATAAAAATCACATTAAATTGTTTTATTTAT
CTCTTGCATTTTTACCATACACATCAATGAACCCTTACTAATCCATACTA
TTTATATACAAAAAAACCTTCAATACCTCCTAGTTTTATCCGCCAATTTT
TTTCTACTTCATATCCTATCCCACACCCCCGCTCTCGCCACTTTTACTCA
TGTCCCAATAACCTAAACCATTTCCCCTCTTATCTATCCTATCTATTGAA
TTACTTCTATTCATTTCAATACACACACCAACGTATTCACTTCTATAAAA
AAACAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_j07.b1 MSMg01no081_j07.b1 CHROMAT_FILE:
MSMg01no081_j07.b1 PHD_FILE: MSMg01no081_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:50 2005
         (190 letters)



>mm_chr11_73828644_73829233
          Length = 590

 Score =  327 bits (169), Expect = 3e-94
 Identities = 181/185 (97%), Gaps = 2/185 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccttcctgtatcggggacctcaaacacatacaagaattggttatcctcacaatag 66
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 207 gaattccttcctgtataggggacctcaaacacatagaagaattggttatcctcacaatag 266

                                                                       
Query: 67  tcattcacctactgcacaaaggggtacaccttgcctaacagataaatagcatagtttctt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcattcacctactgcacaaaggggtacaccttgcctaacagataaatagcatagtttctt 326

                                                                       
Query: 127 gtgttcactgcaacataaaaacgtga-ctgtcttttctgccccagtaggctatgtaaaac 185
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 327 gtgttcactgcaacataaaaacgt-agctgtcttttctgccccagtaggctatgtaaaac 385

                
Query: 186 tctga 190
           |||||
Sbjct: 386 tctga 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)