Query= MSMg01no081_k22.b1 MSMg01no081_k22.b1 CHROMAT_FILE:
MSMg01no081_k22.b1 PHD_FILE: MSMg01no081_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:58 2005
(512 letters)
>mm_chr11_3066961_3067872
Length = 912
Score = 924 bits (478), Expect = 0.0
Identities = 501/510 (98%), Gaps = 3/510 (0%)
Strand = Plus / Plus
Query: 1 actcagataaaactgcacactaattaaacattttaaaacagtacctaaatacactttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcagataaaactgcacactaattaaacattttaaaacagtacctaaatacactttaaa 260
Query: 61 taacttatttttacttgaataatttcttaggctggggagatggctcagatgataatgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacttatttttacttgaataatttcttaggctggggagatggctcagatgataatgtgt 320
Query: 121 ttgctatgcaggcatgaggcccccagtacagagacgcaaaatagcccaatgacacacgct 180
|||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctacgcaggcatgaagccccgagtacagagacgcaaaatagcccaatgacacacgct 380
Query: 181 ggatcatggattcagatctaagtaagtatagctgtatagcagcaggctgtactctcctgg 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ggatcatggattcagatctaagtaagtatagctgtaaagcagcaggctgtactctcctgg 440
Query: 241 gcttgtgtagtactgacagtcagaacccagagaaccacaaggggcataagcacataacca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 gcttgtgtagtactgacagtcagaacccagagaaccacaaggggcataagcacagaacca 500
Query: 301 gttataaaaaggttttgttacatgtatcaagagattcaaagtagactttgtgtcaagggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttataaaaaggttttgttacatgtatcaagagattcaaagtagactttgtgtcaagggc 560
Query: 361 catgcagaaggaacaacaaatggctttagaactcatagaattgaattcagcccactggtt 420
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 catgcagaaggaacaa---atggctttagaactcatggaattgaattcagcccactggtt 617
Query: 421 accatagctatgatgggtgtgccttggagaggcagaacacgaggactacatgtcctgaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 accatagctatgatgggtgtgccttggagaggcagaacacgaggactacatgtcctgaag 677
Query: 481 actccaatgctgctgtggagttttgctctg 510
||||||||||||||||||||||||||||||
Sbjct: 678 actccaatgctgctgtggagttttgctctg 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_k22.g1 MSMg01no081_k22.g1 CHROMAT_FILE:
MSMg01no081_k22.g1 PHD_FILE: MSMg01no081_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:58 2005
(440 letters)
>mm_chr11_3160211_3161050
Length = 840
Score = 835 bits (432), Expect = 0.0
Identities = 438/440 (99%)
Strand = Plus / Minus
Query: 1 ccaccccaccaccctgaggttattgcaagagcttttgttcttgcttcactgtggattctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ccaccccaccaccctgaggttattgcaagagcttttgttcttgcttcactgtggattctg 589
Query: 61 gggatctgaactcaagttctcctgtctttctgtttttgagacagattctttctatgtagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gggatctgaactcaagttctcctgtctttctgtttttgagacagattctttctatgtagc 529
Query: 121 tcaactggccttgagtttgagattctgccttttcatctgttgtgggagctacatctggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tcaactggccttgagtttgagattctgccttttcatctgttgtgggagctacatctggct 469
Query: 181 tgatgttagtttctgtgagtttattaagatggtatttgcagggcttctgtgtttcctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgatgttagtttctgtgagtttattaagatggtatttgcagggcttctgtgtttcctttt 409
Query: 241 caaagtcagtatatgtttcaggagagatactttgaaaaagatctgcattctaattctcaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 caaagtcagtagatgtttcaggagagatactttgaaaaagatctgcattctaattctcaa 349
Query: 301 ggtttaattttattattagatttatttatgtgtgtattttctcacatgtgtgcctgtgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggtttaattttattattagatttatttatgtgtgtattttctcacatgtgtgcctgtgta 289
Query: 361 ccacttgagtcacaagagggtgttgtgaccccctggaaatggagttacagatgattgtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ccacttgagtcacaagagggtgttgtgaccccctggaaatggagttacagatgattgtga 229
Query: 421 gccaccttttgagtgctgaa 440
||||||||||||||| ||||
Sbjct: 228 gccaccttttgagtggtgaa 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
