Query= MSMg01no081_m20.b1 MSMg01no081_m20.b1 CHROMAT_FILE:
MSMg01no081_m20.b1 PHD_FILE: MSMg01no081_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:07 2005
(241 letters)
>mm_chr11_4302397_4303038
Length = 642
Score = 429 bits (222), Expect = e-125
Identities = 234/238 (98%), Gaps = 1/238 (0%)
Strand = Plus / Minus
Query: 5 gaattc-acttgttacccttttcaagcgacattcagcagaatgaaaagtatttagaatac 63
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaattcaacttgttagtcttttcaagcgacattcagcagaatgaaaagtatttagaatac 383
Query: 64 ttcttaagaaacgcttgttaaggacccttcgttagacaagggttcagtgccctttttggg 123
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttcttaagaaacgtttgttaaggacccttcgttagacaagggttcagtgccctttttggg 323
Query: 124 ctctgtgggcactacacacacatacacagaaaaataatttttaaatacttaaagaaaaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctctgtgggcactacacacacatacacagaaaaataatttttaaatacttaaagaaaaga 263
Query: 184 aattctagtctactccagagcttacagaggcatactctgtgtccttctctaaagggac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aattctagtctactccagagcttacagaggcatactctgtgtccttctctaaagggac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space: 146856
Effective search space used: 146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no081_m20.g1 MSMg01no081_m20.g1 CHROMAT_FILE:
MSMg01no081_m20.g1 PHD_FILE: MSMg01no081_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:07 2005
(412 letters)
>mm_chr11_4145679_4146490
Length = 812
Score = 785 bits (406), Expect = 0.0
Identities = 409/410 (99%)
Strand = Plus / Plus
Query: 1 agggtacttcaaacagtaggttatatccctctatcttcaagaagcgggctgggtgtggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggtacttcaaacagtaggttatatccctctatcttcaagaagcgggctgggtgtggct 260
Query: 61 caccgatgagcactggctgctattctagaggacccaggatctataacaggactttctcag 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 caccgatgagcactggctgctattctagagggcccaggatctataacaggactttctcag 320
Query: 121 acccttcagtgatataaatgacacagaggcttatgaatattttacagcttaggccttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccttcagtgatataaatgacacagaggcttatgaatattttacagcttaggccttttg 380
Query: 181 gtgagcagtctgcagaccactctaaccctaactctctgtcctgccacgtggccagggcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgagcagtctgcagaccactctaaccctaactctctgtcctgccacgtggccagggcta 440
Query: 241 cctttctgctctgtttaccttcgtgtccgctggctcattctcttgtgtctccatttttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctttctgctctgtttaccttcgtgtccgctggctcattctcttgtgtctccatttttct 500
Query: 301 cccaaagtccctatctccgtctggacattaggttttccatttcctgccaggctattggcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccaaagtccctatctccgtctggacattaggttttccatttcctgccaggctattggcc 560
Query: 361 gtcagctctttattacagccaatcagatacaattccagattgccttcggc 410
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcagctctttattacagccaatcagatacaattccagattgccttcggc 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
