BAC Information

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BAC

Clone NameMSMg01-082A02
Chromosome11 (Build37)
Map Location 62,940,045 - 63,061,004
singlet/doubletdoublet
Overlap genePmp22, LOC433423
Upstream geneSpecc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3
Downstream geneLOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082A02.T7 (MSMg01no082_a02.b1)MSMg01-082A02.TJ (MSMg01no082_a02.g1)
ACCAG302475AG302476
length680681
length of high quality
(start - end)
314 (50 - 363)552 (77 - 628)
definitionCHROMAT_FILE: MSMg01no082_a02.b1 PHD_FILE: MSMg01no082_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:23 2005CHROMAT_FILE: MSMg01no082_a02.g1 PHD_FILE: MSMg01no082_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,940,045 - 62,940,344)(63,060,453 - 63,061,004)
sequence
CCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCTAGAAAGTGCTCTAGGAGTTTTGTAGATGTAACAAGGAG
GAGTAAGACAGAACAGGGCCTTGCATGGTACCCATTTTGTACGGTCATTG
CAAAGATTAGTGATTTGATTCATATGAAATGCTCAGGGTGATCCTTGGTC
TTAATAGGATGGCTTGGTAAATACAAATGGCTAATGCTATTAATTTAGTC
CATGACTTCTGAATGGAGTGATCACTCCTGAGAGACTCAAACTCAGTGCA
GCAGAAACACTCAGCCTTTAGAACTAGCCAGTCTGGGGTGACCTCACTGT
TTCCTCGGTGAAGTTGTACGAGTCTTATTTTCTCTATGTGTAAAGGGGAG
GCAAACATCCATGATGATAAATATGATTGGGTGACTGTTCTGTGTGATTA
TCATGGCAAGTAGCTCAATGGGACATTATTCATGGCTGCAATGAAGTCCT
ATTTGGCCAAGGAGAGTGATCCTTAAAGGAGCGTGAGAGAACCACAACGA
CATCTCCCTCAGGTGGCTTCAAGGGGGAGGAGGCAGACATCTCAGGCCTG
ATGGGTGAAGACTGGTGCGTATGAGCTGTATAGTCAGCAGCTCTGCCAGG
GCTTATCAGCTGATATGGAGGGCCAAAGAG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTCTGTTGTAGAGTTTATCTG
GCTTTGTGTGTGGCTTTTTTTAGATACATTAGGGAACAATATAGAAAGAC
CATCCATATTAAATATCTAAAACTATTCAGGGGAAGGAAGAGAGAGAGAA
TTTTTACAACACTATATTTGTGCACTTCCTTTGTGGGAAGCTTCCAGTCA
ATGTCTTTGAAGCCTGCCCTTATGATACATGATAGGTGACAGAGTCAGGC
AGTGAGCCTTGGGGTCCTCTTTGAAACCTGTTGGCAAAGGCTGGATCACA
TTTGGGACAATGGAGGACACAGAGAGGGTGGAAAGACAGAATCCATCATG
GCTCCTACAGGAGCAGAACAAAGGAAGTCTGCCTCCTGTCTCCACCACCG
CTCCAAGCGGGTTGTGTTCACTTTAAAATCATTCCCCAGGACAATAAAAA
GTTAAGGAAACAAGGCCATGCGCGGTGGAGGGCTCTAGTAATCCCAGCAC
CCTAAGAGCAGAGACAGAAGGATTGCAGCCAAGTTCATCGAGGCTCATCT
GGTCTACACAGCAAGTTCCAGGCCAGCCAGTGCATACACAAGACCGATCA
AACCCAAAACACCAAATAAACATTACAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_a02.b1 MSMg01no082_a02.b1 CHROMAT_FILE:
MSMg01no082_a02.b1 PHD_FILE: MSMg01no082_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:23 2005
         (314 letters)



>mm_chr11_62939831_62940544
          Length = 714

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaaagtgctctaggagttttgtagatgtaacaaggaggagtaagacagaacagggccttg 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaaagtgctctaggagttttgtagatgtaacaaggaggagtaagacagaacagggccttg 274

                                                                       
Query: 75  catggtacccattttgtacggtcattgcaaagattagtgatttgattcatatgaaatgct 134
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 275 catggtacccattttgtacggtcattgcaaaggttagtgatttgattcgtatgaaatgct 334

                                                                       
Query: 135 cagggtgatccttggtcttaataggatggcttggtaaatacaaatggctaatgctattaa 194
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 335 cagggtgatccttggtcttaataggatggcttggtaaatataaatggctaatgctattaa 394

                                                                       
Query: 195 tttagtccatgacttctgaatggagtgatcactcctgagagactcaaactcagtgcagca 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttagtccatgacttctgaatggagtgatcactcctgagagactcaaactcagtgcagca 454

                                                                       
Query: 255 gaaacactcagcctttagaactagccagtctggggtgacctcactgtttcctcggtgaag 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaaacactcagcctttagaactagccagtctggggtgacctcactgtttcctcggtgaag 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no082_a02.g1 MSMg01no082_a02.g1 CHROMAT_FILE:
MSMg01no082_a02.g1 PHD_FILE: MSMg01no082_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:23 2005
         (552 letters)



>mm_chr11_63060367_63061318
          Length = 952

 Score = 1029 bits (532), Expect = 0.0
 Identities = 547/552 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctctgttgtagagtttatctggctttgtgtgtggctttttttagatacattagggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgtctctgttgtagagtttatctggctttgtgtgtggctttttttagatacattagggaa 579

                                                                       
Query: 61  caatatagaaagaccatccatattaaatatctaaaactattcaggggaaggaagagagag 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 caatatagaaggaccatccatattaaatatctaaaactattcaggggaaggaagagagag 519

                                                                       
Query: 121 agaatttttacaacactatatttgtgcacttcctttgtgggaagcttccagtcaatgtct 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agaatttttacaacgctatatttgtgcacttcctttgtgggaagcttccagtcaatgtct 459

                                                                       
Query: 181 ttgaagcctgcccttatgatacatgataggtgacagagtcaggcagtgagccttggggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttgaagcctgcccttatgatacatgataggtgacagagtcaggcagtgagccttggggtc 399

                                                                       
Query: 241 ctctttgaaacctgttggcaaaggctggatcacatttgggacaatggaggacacagagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctctttgaaacctgttggcaaaggctggatcacatttgggacaatggaggacacagagag 339

                                                                       
Query: 301 ggtggaaagacagaatccatcatggctcctacaggagcagaacaaaggaagtctgcctcc 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 338 ggtggaaagacagaatccatcatggctcctacaagagcagaacaaaggaagtctgcctcc 279

                                                                       
Query: 361 tgtctccaccaccgctccaagcgggttgtgttcactttaaaatcattccccaggacaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgtctccaccaccgctccaagcgggttgtgttcactttaaaatcattccccaggacaata 219

                                                                       
Query: 421 aaaagttaaggaaacaaggccatgcgcggtggagggctctagtaatcccagcaccctaag 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 218 aaaagttaaggaaacaaggccatgcgtggtggagggctctagtaatcccagcaccctaag 159

                                                                       
Query: 481 agcagagacagaaggattgcagccaagttcatcgaggctcatctggtctacacagcaagt 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 158 agcagagacagaaggattgcagccaagttcatcgaggctcacctggtctacacagcaagt 99

                       
Query: 541 tccaggccagcc 552
           ||||||||||||
Sbjct: 98  tccaggccagcc 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)