BAC Information

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BAC

Clone NameMSMg01-082D01
Chromosome11 (Build37)
Map Location 4,145,879 - 4,146,417
singlet/doubletsinglet
Overlap genenone
Upstream geneDrg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm
Downstream geneLif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082D01.T7 (MSMg01no082_d01.b1)MSMg01-082D01.TJ (MSMg01no082_d01.g1)
ACCAG302617AG302618
length1,173698
length of high quality
(start - end)		---539 (73 - 611)
definitionCHROMAT_FILE: MSMg01no082_d01.b1 PHD_FILE: MSMg01no082_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:36 2005CHROMAT_FILE: MSMg01no082_d01.g1 PHD_FILE: MSMg01no082_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTAAAATTCTTACAATAAACACACACATATTTTTATTTTTTATTTTT
TGTTATTGCCTTTTCCCCTCCAAACCCAGGCGCCTGCACCACACAACACT
ATAACGCGTAACCGAAATAACTTTATTTATTACAGTAACTCCGCGCTTTC
CTCTATATTCTCTTACCTCAACTATTTTTTGACTGCTGGTATTCGAACAC
GCGGAATGACGGTGGTCGTTTCAGAACCGCCGCGATTATCCACCACTAAT
ACAAACATCAAACCGCCGCCAAATCTGATTGGTTTGTCCCAATTGATTGA
ATTGCGCTGGTAATACGAATGGTGAACGGCGAATGATGAGTAAGCGCTAA
ATCGGCGAAACGGGAAAAGAGCGGAGACTGCGGGCATAATGCACGTGGGT
GGGCGTGAGCCGTGCGCCGCGCGATAGGTCGCGCGCCGTGGCGTTTCACC
GCGGTGCGATACTTTTGAATACAGTGAAAAGTGGGGCGGAGATATTACAG
AAAACGGGGGGCGCCCGGTTCCGCGGGGATATTGCCTCGGCGTTTGGGGG
ATCTTGCGGTATCTTTTGTGGGGGCGACCTCGTTTGCGCGCGCGCGTAAA
AGATATTAAACCCGTGAATGTATACAGACCCACGAAAAGCGTAATAAATA
TGCGCGCCGCCTATATAAGAATAGGGGGAGACATGCGGTGTGAAAATGCT
GCGGGATGCGGAGGCGGGCGCCAAACAAGATGCGTTTTACGGAGGGGGCT
TTACCTTGCGCGGGTAGTACTGGGGATATTGGGTATATATATTATTCCCG
TACGTTTCGGGCGCCGTCAATAGGATTAGGATGAGATGGGAGGTTAACAG
CGGGGTCGGTTTGGCATCAGCAGAGAGGTGAATGAAGGCGGCGAATAAGA
GGGTATAGAAGTAACACCGAGGCGGCGGGCCAACGCAGTATATAACCGCA
ATTATGGACGGGCGTATATGGATTCGAGGCCGTATTGTAGTGAATGATAA
TGCGGCCGGCCGGGTCGAGGATAACGAATCATTAGACGGGTGATATTTTG
CGCCGGGCTAATTCGGATTATTCTTTAGTCCCAGTTGGCGCGCGACGATA
GCGGGTAACTATTAGTGGGCGTGATTATATACGAGTGTATGGTAGTATCG
GCGCGCGCGTTAATCCGCGCGAC

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGGTACTTCAAACAGTAGGTTATATCC
CTCTATCTTCAAGAAGCGGGCTGGGTGTGGCTCACCGATGAGCACTGGCT
GCTATTCTAGAGGACCCAGGATCTATAACAGGACTTTCTCAGACCCTTCA
GTGATATAAATGACACAGAGGCTTATGAATATTTTACAGCTTAGGCCTTT
TGGTGAGCAGTCTGCAGACCACTCTAACCCTAACTCTCTGTCCTGCCACG
TGGCCAGGGCTACCTTTCTGCTCTGTTTACCTTCGTGTCCGCTGGCTCAT
TCTCTTGTGTCTCCATTTTTCTCCCAAAGTCCCTATCTCCGTCTGGACAT
TAGGTTTTCCATTTCCTGCCAGGCTATTGGCCGTCAGCTCTTTATTACAG
CCAATCAGATACAATTCCAGATTGCCTTCGGCAGGTGAGCAAGGAACAAA
TATTTACAAAATAAGAGATGGTTGATGGGTCTTAGAAATAACAATACCAG
GTCCTGCCAGCATCCAGCTCTCTGCCAGTGCAGAATTAACAATTGAATAT
ACAGAGACACACCCTTCCACAATGTGCCCCAACAGGAATCAATTCCAGAT
GTGAGAAAAAAGTAGCAGCTGTATACTCACCTTTCTGGCGGTTGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_d01.g1 MSMg01no082_d01.g1 CHROMAT_FILE:
MSMg01no082_d01.g1 PHD_FILE: MSMg01no082_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:36 2005
         (539 letters)



>mm_chr11_4145679_4146617
          Length = 939

 Score = 1011 bits (523), Expect = 0.0
 Identities = 535/539 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtacttcaaacagtaggttatatccctctatcttcaagaagcgggctgggtgtggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggtacttcaaacagtaggttatatccctctatcttcaagaagcgggctgggtgtggct 260

                                                                       
Query: 61  caccgatgagcactggctgctattctagaggacccaggatctataacaggactttctcag 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 caccgatgagcactggctgctattctagagggcccaggatctataacaggactttctcag 320

                                                                       
Query: 121 acccttcagtgatataaatgacacagaggcttatgaatattttacagcttaggccttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccttcagtgatataaatgacacagaggcttatgaatattttacagcttaggccttttg 380

                                                                       
Query: 181 gtgagcagtctgcagaccactctaaccctaactctctgtcctgccacgtggccagggcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgagcagtctgcagaccactctaaccctaactctctgtcctgccacgtggccagggcta 440

                                                                       
Query: 241 cctttctgctctgtttaccttcgtgtccgctggctcattctcttgtgtctccatttttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctttctgctctgtttaccttcgtgtccgctggctcattctcttgtgtctccatttttct 500

                                                                       
Query: 301 cccaaagtccctatctccgtctggacattaggttttccatttcctgccaggctattggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccaaagtccctatctccgtctggacattaggttttccatttcctgccaggctattggcc 560

                                                                       
Query: 361 gtcagctctttattacagccaatcagatacaattccagattgccttcggcaggtgagcaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 561 gtcagctctttattacagccaatcagatacaattccagattgccttcggcagttgagtaa 620

                                                                       
Query: 421 ggaacaaatatttacaaaataagagatggttgatgggtcttagaaataacaataccaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 ggaacaaatatttacaaaataagagatggttgatgggtcttagaaataacaatactaggt 680

                                                                      
Query: 481 cctgccagcatccagctctctgccagtgcagaattaacaattgaatatacagagacaca 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgccagcatccagctctctgccagtgcagaattaacaattgaatatacagagacaca 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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