Query= MSMg01no082_d03.b1 MSMg01no082_d03.b1 CHROMAT_FILE:
MSMg01no082_d03.b1 PHD_FILE: MSMg01no082_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:37 2005
(282 letters)
>mm_chr11_3066937_3067618
Length = 682
Score = 478 bits (247), Expect = e-139
Identities = 256/259 (98%)
Strand = Plus / Plus
Query: 24 gactcagataaaactgcacactaattaaacattttaaaacagtacctaaatacactttaa 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gactcagataaaactgcacactaattaaacattttaaaacagtacctaaatacactttaa 283
Query: 84 ataacttatttttacttgaataatttcttaggctggggagatggctcagatgataatgtg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ataacttatttttacttgaataatttcttaggctggggagatggctcagatgataatgtg 343
Query: 144 tttgctatgcaggcatgaggcccccagtacagagacgcaaaatagcccaatgacacacgc 203
||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 344 tttgctacgcaggcatgaagccccgagtacagagacgcaaaatagcccaatgacacacgc 403
Query: 204 tggatcatggattcagatctaagtaagtatagctgtaaagcagcaggctgtactctcctg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tggatcatggattcagatctaagtaagtatagctgtaaagcagcaggctgtactctcctg 463
Query: 264 ggcttgtgtagtactgaca 282
|||||||||||||||||||
Sbjct: 464 ggcttgtgtagtactgaca 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no082_d03.g1 MSMg01no082_d03.g1 CHROMAT_FILE:
MSMg01no082_d03.g1 PHD_FILE: MSMg01no082_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:37 2005
(370 letters)
>mm_chr11_3160143_3160912
Length = 770
Score = 685 bits (354), Expect = 0.0
Identities = 366/370 (98%)
Strand = Plus / Minus
Query: 1 ccaccccaccaccctgaggttattgcaagagcttttgttcttgcttcactgtggattctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ccaccccaccaccctgaggttattgcaagagcttttgttcttgcttcactgtggattctg 657
Query: 61 gggatctgaactcaagttctcctgtctttctgtttttgagacagattctttctatgtagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gggatctgaactcaagttctcctgtctttctgtttttgagacagattctttctatgtagc 597
Query: 121 tcaactggccttgagtttgagattctgccttttcatctgttgtgggagctacatctggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tcaactggccttgagtttgagattctgccttttcatctgttgtgggagctacatctggct 537
Query: 181 tgatgttagtttctgtgagtttattaagatggtatttgcagggcttctgtgtttcctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgatgttagtttctgtgagtttattaagatggtatttgcagggcttctgtgtttcctttt 477
Query: 241 caaagtcagtatatgtttcaggagagatactttgaaaaagatctgcattctaattctcaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 caaagtcagtagatgtttcaggagagatactttgaaaaagatctgcattctaattctcaa 417
Query: 301 ggttcaattttattattagatttatttatgtgtgtattttctcacccgtgtgcctgtgta 360
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 416 ggtttaattttattattagatttatttatgtgtgtattttctcacatgtgtgcctgtgta 357
Query: 361 ccacttgagt 370
||||||||||
Sbjct: 356 ccacttgagt 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space: 274721
Effective search space used: 274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
