BAC Information

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BAC

Clone NameMSMg01-082I11
Chromosome11 (Build37)
Map Location 42,272,001 - 42,272,282
singlet/doubletsinglet
Overlap geneGabrb2
Upstream geneHspd1, LOC100039292, Gabrg2, Gabra1, Gabra6
Downstream geneAtp10b, EG544767, Pttg1, Slu7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082I11.T7 (MSMg01no082_i11.b1)MSMg01-082I11.TJ (MSMg01no082_i11.g1)
ACCAG302875AG302876
length675679
length of high quality
(start - end)
303 (70 - 372)418 (72 - 489)
definitionCHROMAT_FILE: MSMg01no082_i11.b1 PHD_FILE: MSMg01no082_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:01 2005CHROMAT_FILE: MSMg01no082_i11.g1 PHD_FILE: MSMg01no082_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATAATTTGCCGCGCTAAACGACTCACTTACAAAGAGGATCCGCGGAA
TTCCAGATTGAACATTATGTGCTACCTGAAGAATTATCAAATAGGTCATA
CAGAGAAAAATTTAGGTTCACTAGAAAATCATTCACATTTACATTTACTT
CCTATAGAAAACTGAAATCATTCTTCCTTCCTAAACCAATATTCCAGGTG
CCTTTATCCATCTTATGTGCACACACACACACACACACACACACACACAC
ACACACACACACACACGCATATCAGCAGGCACATCCCTGATATTAGATAC
GCAAATAAAATCACCAAAGATTTATGTTTCATATAAAATCTAGATTGCTC
TGGGACAAAGTTGAATTGATAGTTATAATCTTGCCTTCTGTAATATAATT
TAGTTGCATTACCAAAAATTTTGCATCATCAACCACGCTATAGCTGCATG
AAACAATTGATCAGTTTATATAATTGTCTTACTCTGCCTCTTACTACTGT
GGAGAGACATCACAATCACGGCCACTCTTATAAAGGAAAATTTTTAATTG
CGGATGGCTTACAGCCTTAGAGGTGCTGTCCCTGTTCCTCCATGCCGATA
AACACACATGATGCCGCAGGAACTGACAATTCTACTCTTAATCCACAGGC
AGCACACAGACACCTCTTGCACACG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACTCAATGGAGTACTACTCAGCTATTAAAAAGAATGATTTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCTCAAAGAAACTCACACAATATGTATTCACTGATAAGTGGA
TATTTAGCCCCAACCCTAGGATACCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_i11.b1 MSMg01no082_i11.b1 CHROMAT_FILE:
MSMg01no082_i11.b1 PHD_FILE: MSMg01no082_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:01 2005
         (303 letters)



>mm_chr11_42271801_42272503
          Length = 703

 Score =  487 bits (252), Expect = e-142
 Identities = 280/302 (92%), Gaps = 20/302 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctacctgaagaattatcaaataggtcatacagagaaaaatttaggttcactagaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctacctgaagaattatcaaataggtcatacagagaaaaatttaggttcactagaaaat 260

                                                                       
Query: 61  cattcacatttacatttacttcctatagaaaactgaaatcattcttccttcctaaaccaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattcacatttatatttacttcctatagaaaactgaaatcattcttccttcctaaaccaa 320

                                                                       
Query: 121 tattccaggtgcctttatccatcttatgtgcacacacacacacacacacacacacacaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 321 tattccaggtgcctttatccatcttatgtgcacacacacacacacacacacacacac--- 377

                                                                       
Query: 181 cacacacacacacacacgcatatcagcaggcacatccctgatattagatacgcaaataaa 240
                            ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 378 -----------------gcatatcagcaggcacatccctgatattagatacgtaaataaa 420

                                                                       
Query: 241 atcaccaaagatttatgtttcatataaaatctagattgctctgggacaaagttgaattga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atcaccaaagatttatgtttcatataaaatctagattgctctgggacaaagttgaattga 480

             
Query: 301 ta 302
           ||
Sbjct: 481 ta 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)