BAC Information

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BAC

Clone NameMSMg01-082M01
Chromosome11 (Build37)
Map Location 26,187,031 - 26,187,385
singlet/doubletsinglet
Overlap genenone
Upstream gene5730522E02Rik, LOC100042328, LOC100042345
Downstream geneFancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082M01.T7 (MSMg01no082_m01.b1)MSMg01-082M01.TJ (MSMg01no082_m01.g1)
ACCAG303047AG303048
length691684
length of high quality
(start - end)
66 (100 - 165)367 (76 - 442)
definitionCHROMAT_FILE: MSMg01no082_m01.b1 PHD_FILE: MSMg01no082_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:18 2005CHROMAT_FILE: MSMg01no082_m01.g1 PHD_FILE: MSMg01no082_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTGATATGCCCTCCCTGATAAGTGGATATTAGCCCAGAAACCTACA
ATACCCAACATACAATTTGCAAAACACAAGAATCTCAAGAAGAAGGAAGA
CCAATGCATGGATACTTCATTCCTCCCTAGAATAGGACATAAAATACCCA
TGGAAGGAGTTACAAAGTTTGGAGCTAAGACGAAAGGATGGACAATCCAT
ACTTTCCTATATGTGTGTCTGTCACTTCTTCATCCCATGTCACCCCCATT
AGGACAATCCATAAACTTGACAGTTCATGGCAAAACTCTTTCTTCTTTAA
GCTGCCTTCAGGAAGAGTGTTTTATCACAGCCTGACACCAAATACCTGAT
ATACGAGCTGGCTCCACCAGTAGGGTGTTGCTGTGATGCACTGACCATGT
TTTTTTGGCGGGAGAACTATGGCAGAAATACAAACCACCCCAGTACCCAG
CTTCAAGGCCTATGCTGTGGGCCCCCCTCCGAACCATGTTGCCCAAAACG
CAGACCATGCATGCCTGACCTGTGAAGCTTCCCAGGANAGCCCAACCCAT
GCCGCCCTTGCCTGCGCCATATCTCTGTTTTAAGACTCTGTGCCCCCCTG
CCCCTCCTGACACTGGACCATTAATCATCTTTAACCCGCCT
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTTCTGAAGGCACCTAGCAGAAGA
CTGGCTTCCAGGAAGCTAAGGTGAGGGTCTTAAAGCACACTCCCACTAAT
CCAACAAGGCTACAGCTCAAAATAGTGCCACTTTCTGGGACAAGCATATA
CAAAACATCACATAGCCTAAAGTTCGTTTACATTTAGAAGCTATTCAGGA
AAATTCTAACATGCAAAGTAGGCACTCAATTATCTCTCATTTCTTGTCAA
GTTCTAAATTTATTTCCATGTCCTTTAATGCTATTTATTTATTTATTTAT
TTATTTATTTATTTAAGCTTTTCTTTCCAACTGCATTTTCCTTCTGCCTT
TCACAACACATGATATATGACAACTGTGTGGATTCATCATAGCAAAGATA
GAGTGAATTAAACTGGAAGATAGTTTAAAGGATGACGTTTGTAGATCATC
TCTGCCTTTACAATCTTATCATTTTTACTGAGTCCTGCAATTGATGCAGC
CAGGTTCTGTACTTGGCTCCAATGAACTGATATCCTCACTCTGAAGAACT
ATCAATCGCTATCTGCATATAAGTAAAAATCTTATCAGAAAAAGGAAAAG
AAAAAGAAAAAAAAAACCCGTATTGGTGGTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_m01.g1 MSMg01no082_m01.g1 CHROMAT_FILE:
MSMg01no082_m01.g1 PHD_FILE: MSMg01no082_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:18 2005
         (367 letters)



>mm_chr11_26186831_26187597
          Length = 767

 Score =  629 bits (325), Expect = 0.0
 Identities = 351/367 (95%), Gaps = 12/367 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttctgaaggcacctagcagaagactggcttccaggaagctaaggtgagggtcttaaag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tgttctgaaggcacctagcagaagactggcttcctggaagctaaggtgagggtcttaaag 260

                                                                       
Query: 61  cacactcccactaatccaacaaggctacagctcaaaatagtgccactttctgggacaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacactcccactaatccaacaaggctacagctcaaaatagtgccactttctgggacaagc 320

                                                                       
Query: 121 atatacaaaacatcacatagcctaaagttcgtttacatttagaagctattcaggaaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatacaaaacatcacatagcctaaagttcgtttacatttagaagctattcaggaaaatt 380

                                                                       
Query: 181 ctaacatgcaaagtaggcactcaattatctctcatttcttgtcaagttctaaatttattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaacatgcaaagtaggcactcaattatctctcatttcttgtcaagttctaaatttattt 440

                                                                       
Query: 241 ccatgtcctttaatgctatttatttatttatttatttatttatttatttaagcttttctt 300
           ||||||||||||||||||||||||||||||||||||||            || |||||||
Sbjct: 441 ccatgtcctttaatgctatttatttatttatttattta------------agtttttctt 488

                                                                       
Query: 301 tccaactgcattttccttctgcctttcacaacacatgatatatgacaactgtgtggattc 360
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 489 tccaactgcattttccttctgcctttcacaacacatgatacatgacaactgtgtagattc 548

                  
Query: 361 atcatag 367
           |||||||
Sbjct: 549 atcatag 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)