BAC Information

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BAC

Clone NameMSMg01-083E15
Chromosome11 (Build37)
Map Location 53,167,239 - 53,167,473
singlet/doubletsinglet
Overlap geneAff4, LOC100040576
Upstream geneVdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10
Downstream geneLeap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083E15.T7 (MSMg01no083_e15.b1)MSMg01-083E15.TJ (MSMg01no083_e15.g1)
ACCAG303454AG303455
length674679
length of high quality
(start - end)
234 (76 - 309)337 (74 - 410)
definitionCHROMAT_FILE: MSMg01no083_e15.b1 PHD_FILE: MSMg01no083_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:58 2005CHROMAT_FILE: MSMg01no083_e15.g1 PHD_FILE: MSMg01no083_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXATCGGATGTGATCCGCGGAANC
ANTGTTACGTTATTACAGAGGAACNAAAAAAAGAAAAATATGAGGACTAC
AGAAAGCTGCAAAATCTTATTTATAACATGTAGCAAAGATTTTTATCTAG
AATGTTTGTGGAATCTAGACATGCTTGTAATTTGGGAGGCCAAATTAAAA
GCTGGGTATAGTAGTACAAACCTTTAATCTCAGCACTTGAAAGGTATTTA
CAGGTGGATCTCTATGAGTTCAATGCCAACCTGGTCTACATACTGCAAGT
TTCAATCCATTTGAGTAATTCAAAAGAGATCCTGTCTCAAAAACAAACAA
ATTTTTATCCCTCCCACTTTTATGAAAGGCACTACAAAAAAGGGGGAAGT
TTCCATACATTTTGAACTCCATTTTAGGCCAATAAGTAGTCAAGAAGAAG
AAATACCTGTTAAACACCTGTTTTCTTTGTTCTTTTCAGGTACACATAAA
ACCATGACTTCTACCTTACTACCTCAAAAATAAATAAATAAATAAATAAA
TAAGTAGAGCCATAGCTTTTAGCAGTCTTCATCTTCCATAGCACTTTCTG
AAGCTAATCCCCATTTCCCTCCTTTTAGATACTGATCACTTACTTGTTTT
TCTTTTTTTACGTTACCTGTACAT
TCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTGTCTAGATCTGGATATTGTTTTTT
AACCAGCCTATTTGGTTTCTTGAATTCTTTATCTATTTTGGAAATTTCCC
CTCTGTTGGACATGGGGTTGGTGAAAATCTTTTCCCATTCTGTAGGCTGC
CATTTTGTCCTATGATAGTGTCTTCTGCCTTACAGAAACTAGAGGCTTCA
TCCAGCAACTGATGGAAACAGATGCAGAGACCCACAGCCAAACATTAGGG
GGAGCTTGGGGAATCCTGTGGTAGAGGAGGAGGAAGGATTGTAGGAGCCA
GAGAGGTCAAGGACACCACAAGAAAACCCACAGAACCTGGACTAATAGGG
CTCACAGAGACTCAACTGACAACCAGCAGCCTGCATGGGATTGACCTAGG
CCCTCTGCACAGATGTTACAGTTTTATAGCTTGGTCTTGTGGGACTCCTA
ACAGAGGGAGTAGGGGTCTGCCTGTATTTGGGACCTTCTCTTCCCTTCAT
GGTGTCTCTATTCAACCTTAATTCTATTAGAATTACCTCCTCCTAATAAC
ATTTTATATGCCTTATTTGATCGATAACTATGATATGCCTGCTCTTTTCT
GATCTCAATTATCCGATGCTTGGATGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_e15.b1 MSMg01no083_e15.b1 CHROMAT_FILE:
MSMg01no083_e15.b1 PHD_FILE: MSMg01no083_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:58 2005
         (234 letters)



>mm_chr11_53167149_53167783
          Length = 635

 Score =  416 bits (215), Expect = e-121
 Identities = 230/235 (97%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaaag-aaaaatatgaggactacagaaagctgcaaaatcttatttataacatgtagc 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaaaagtaaaaatatgaggactacagaaagctgcaaaatcttatttataacatgtagc 266

                                                                       
Query: 60  aaagatttttatctagaatgtttgtggaatctagacatgcttgtaatttgggaggccaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagatttttatctagaatgtttgtggaatctagacatgcttgtaatttgggaggccaaa 206

                                                                       
Query: 120 ttaaaagctgggtatagtagtacaaacctttaatctcagcacttgaaaggtatttacagg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 205 ttaaaagctgggtatagtagtacaaacctttaatctcagcacttgaaaggtagagacagg 146

                                                                  
Query: 180 tggatctctatgagttcaatgccaacctggtctacatactgcaagtttcaatcca 234
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 145 tggatctctatgagttcaatgccaacctggtctacatacagcaagtttcaatcca 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space:   140850
Effective search space used:   140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)