BAC Information

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BAC

Clone NameMSMg01-084M24
Chromosome11 (Build37)
Map Location 111,943,283 - 111,943,737
singlet/doubletsinglet
Overlap geneLOC100041589
Upstream geneLOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
Downstream geneLOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084M24.T7 (MSMg01no084_m24.b1)MSMg01-084M24.TJ (MSMg01no084_m24.g1)
ACCAG304562AG304563
length729707
length of high quality
(start - end)
448 (39 - 486)301 (69 - 369)
definitionCHROMAT_FILE: MSMg01no084_m24.b1 PHD_FILE: MSMg01no084_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:56 2005CHROMAT_FILE: MSMg01no084_m24.g1 PHD_FILE: MSMg01no084_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TCATTATTTCTCCAAGGATTGCAAAATAGTAATGACAATGTAGTTCTGTA
AACTGACGCTCACTTGGAAAATGGTGGTTGCTTGACCTTTGAAGCAGATT
AGGCTAAAAGAGTTATGAACGAAGTCCCTCCCCCCCCATATTTCAACTGC
AGTCTTTCATTTCTCATGAAAGCAGATTTAGGCTTTGTTTCTAAGATCAC
ATAGTAAGGCTGAAAGAGAACTATCACTCCAAGAGATCAGTCTAGATGTA
GATTTTTCAGAAATATTGGTATTTTAACTATTGGATGCACCTCAAGGGAG
ACACTACATCTATTCATGCTTACTTCTCATTGTGCGATGTGTCCACACAT
CTTTATTATTGCAGCATTGTTCAGAAAGTTTACCAGGTTGTGAACATTCC
AAACATATGCTGAAACTCTAGGACCCCACATTACCTCGGGATAAGTTAAG
TACGTGTGAATATCCTTGCTGGTAGCGAAGAGGTTTGCAAGGGAACGGTG
AATATTCATGATTTATCCTCCCGCAGAGTACCACCACCATAGGATTACCT
CTCTTTATAGCATAGCGCCTGTATCTGTTTAACCCCCTGAATTAACTTAT
CTGATCGGGAATTGTTCATCTAAATCCTTATGTGTACCCCCCCCTTATTT
TTAACACATTCTATATTTTGCCGCGTCGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAGAACAATGTTGCCTATTCAAGTTTTCCCA
CCTTGCCGAGTCAGAGCCTTTTTTCTGACATATTTTGTCCTCCAGGTTTG
CCGGCCTGTGAGATTTCTGGTGGTTCTTCTTTCTCTGCCTCCCATGTCAA
TGTGTAGAGTGCTGGAATTACAGATGTGAAACCAGTACATCTGTCTCTGT
GGTGTGAGTTTTGGAGATTGTACTTGGGCTAGAAACGTTTTTACCCACTG
AGTCATCTATCTCTTCAGCCTGTATACTCAGCAGTACATGTTCCCTTTAT
ACACAGCCCCATAATAAGCAAGGTAGCCAACAAGTCTGGGTGGGGCACAC
GGTTCTCATTAAATCTTAAGAAAAACTTGTGACAATATTGACAATTTTTA
CATCTGTATGAATACCAATGTAGTCAGCACTGTCTTGAGGCTGCAGTTAG
GCAACTATAACATAATGATACAGATTTTAAGGCATTCATGATTTCGAGTT
TACTAGAAGCCATATTCTCCGAGGCAGCTTCCAACCTCCTATGTGGTTCT
AATTTTCCAGTAACTGTCTCTTCTTCCTGCACCGCACCTTTGTGCCGTCA
TACTGTTTTGATTCGTGAAGGTTAATATTTTGGTTGTGCATGTGGCAAAA
AGTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_m24.b1 MSMg01no084_m24.b1 CHROMAT_FILE:
MSMg01no084_m24.b1 PHD_FILE: MSMg01no084_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:56 2005
         (448 letters)



>mm_chr11_111943091_111943937
          Length = 847

 Score =  706 bits (365), Expect = 0.0
 Identities = 429/457 (93%), Gaps = 15/457 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcattatttctccaaggattgcaaaatagtaatgacaatgtagttctgtaaa 64
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattcactcgttatttttccaaggattgcaaaatagtaatgacaatgtagttctgtaaa 252

                                                                       
Query: 65  ctgacgctcacttggaaaatggtggttgcttgacctttgaagcagattaggctaaaagag 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctgatgctcacttggaaaatggtggttgcttgacctttgaagcagattaggctaaaagag 312

                                                                       
Query: 125 ttatgaacgaagt--ccct----------ccccccccatatttcaactgcagtctttcat 172
           |||||||| ||||  ||||          |||||||||||||||||||||||||||||||
Sbjct: 313 ttatgaactaagttcccctcctcccccccccccccccatatttcaactgcagtctttcat 372

                                                                       
Query: 173 ttctcatgaaagcagatttaggctttgtttctaagatcacatagtaaggctgaaagagaa 232
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttctcatgaaagcaggtttaggcattgtttctaagatcacatagtaaggctgaaagagaa 432

                                                                       
Query: 233 ctatcactccaagagatcagtctagatgtagatttttcagaaatattggtattttaacta 292
           ||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||| ||
Sbjct: 433 ctatcactccaagagttcagtctagatgtaga-ttttcagaagtattggtatcttaatta 491

                                                                       
Query: 293 ttggatgcacctcaagggagacactacatctattcatgcttacttctcattgtgcgatgt 352
           ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 492 ttggatgcacctcaagggagacactacatctattcatacttacttctcattgggcgatgt 551

                                                                       
Query: 353 gtccacacatctttattattgcagcattgttcagaaagttt-accaggttgtgaacattc 411
           ||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||
Sbjct: 552 gtccacacatctttattattgcagcattgttcagaaa-tttcaccaggctgtgaacattc 610

                                                
Query: 412 caaacatatgctgaaactctaggaccccacattacct 448
           |||||||||||||||||||||||||||||||||||||
Sbjct: 611 caaacatatgctgaaactctaggaccccacattacct 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 847
Length adjustment: 10
Effective length of query: 438
Effective length of database: 837
Effective search space:   366606
Effective search space used:   366606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)