BAC Information

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BAC

Clone NameMSMg01-084O18
Chromosome11 (Build37)
Map Location 87,535,390 - 87,535,651
singlet/doubletsinglet
Overlap geneRnf43
Upstream geneCltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5
Downstream geneSupt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084O18.T7 (MSMg01no084_o18.b1)MSMg01-084O18.TJ (MSMg01no084_o18.g1)
ACCAG304644AG304645
length754796
length of high quality
(start - end)
265 (62 - 326)106 (65 - 170)
definitionCHROMAT_FILE: MSMg01no084_o18.b1 PHD_FILE: MSMg01no084_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:04 2005CHROMAT_FILE: MSMg01no084_o18.g1 PHD_FILE: MSMg01no084_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATA
AAGCCATACCAAAAGTAAGTATTTTAGATTTTGGTTTGGCCTGTGAGATT
TTTGAGACGTTTGCACAGCTTTTTTGAGATGGGAATCCTAGGAAAACTCC
ATTTGGCTGGGTCAGGTGATGGGACCTGATTGGCATGCTTGGGAAAGGAC
AATTCCCTTAGCAGAGAGAGAGAGAAGCCAGGTGTGATGGCTCACCCTGA
CTGGCAGTGTAACTTGGGCTGAGAATCACTTAGGGGATTAGGAAAGGGTA
CCTACTGGGGGATGTATCTGTGAAGATGTTTCTGGAGAGCTTAATTAAAG
GAGAAGCCCTGCCCCTAATGTGTGCAGTACCATCCCCACGAATGGGCACA
TACGGGTGCCGGCCTTCCTGGGCCATTCTAAAATGAACTTCCCTAGCCCC
AAGGGTCCCCCTCCCTGGGTTACCCCAACAATGGGCCCTAAAAAAATATG
GAAACCCGGCCAAAAATAGGGCCTGATATCTCCCGGAAACAACTGGGCCC
CAAAAAAAAAAGCCCCCCGCCCCCTTCTTTAATAGCGCCCCCCTATTACC
ATTTTTTTCGTCTTTTTCCCCCCCATAGTCTTTTTTGCCCCCTTTTTTAA
GGGGCCCCCCTCTCTTCGCGAAATACAGCCTCACCTTTGTGCTCCCCCGG
TTTATTTCTCCACCCGGCTCTTTTTTTTAACCTCCCACAATGGTGGCGGC
TGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGGCCAGTCTGGTCTACAGAGAGAGTTCAAGGCCA
GCCAAGGCTACCCTGTCTTATGGGGTGGTGGTGGGGGGAATAAAAAGATT
TGGGTGCAGAGGCAGGTCAGGGCACCAGAATCCTGATCTTTGTAAGTTTC
TGACCCCTAATGGATTCCAGGACTCCTAGATCAAAGCCTGTATCAGAGAA
GAGGCTGGTTCCAGAGCCAACAGCCACCGGCATTTCCTGTGTTGGGAAAT
GTGCTTTTTGCTGGTTCTTCTTTATCTGGCCTTCCCCCTGTTTGCCCTTG
TTACGCTAGGCTCTCTGCCCCGTTTTGCTTCCTGTGCTTGTTTTCTTTTT
TTGCCCATTTTCCCCCCTTTTTCTTTATTATATTCTTTTTCCCCTATTCT
TCGTTTTCCCCTCCTCTTTTCTTTCTTTCCTTTTCTTTCCTCTTTTCCTT
TCCCTCTTCTTTTACTTCCTCTCCTTTTTTTCCCCCTTTTTTTCCTCCTT
TTTTTTCTCTCTTTTTCTTCCCCCCTTTCCCTTTCTCCCCTCTTTCTTTT
TTTCTCCCCTTCTTCTTTTCCTCCTCTCTTTTATTTTGTCTTTCGTCGGC
CCCTTTCTTTTTTCTTTCTCCCTCCCTTTCTCCCCTCTTTATTTTTTCCC
CCTTCATTTCTCTTTCACTTTGTTTTTCTTTCCTCTTTTTTTTCTCCCTC
CCCCCCACTTTTTTCTTCCTCCCCGTTTTCTCTATATCCCTTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_o18.b1 MSMg01no084_o18.b1 CHROMAT_FILE:
MSMg01no084_o18.b1 PHD_FILE: MSMg01no084_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:04 2005
         (265 letters)



>mm_chr11_87535190_87535851
          Length = 662

 Score =  455 bits (235), Expect = e-132
 Identities = 257/265 (96%), Gaps = 3/265 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtaagtattttagattttggtttggcctgtgagatttttgagacgtttgcacagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 462 aaagtaagtattttagattttggtttggcctgtgagatttttgagacgtttgcacagctc 403

                                                                       
Query: 61  ttttgagatgggaatcctaggaaaactccatttggctgggtcaggtgatgggacctgatt 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttttgagctgggaatcctaggaaaactccatttggctgggtcaggtgatgggacctgatt 343

                                                                       
Query: 121 ggcatgcttgggaaaggacaattcccttagcagagagagagagaagccaggtgtgatggc 180
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 342 ggcatgcttgggaaaggacaattcccttagc--agagagagagaagccaggtgtgatggc 285

                                                                       
Query: 181 tcaccctgactggcagtgtaacttgggctgagaatcacttaggggattaggaaagggtac 240
           |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 284 tcaccctgaccggcagtgtaac-tgggctgagaatcacttagggaattaggaaagggtac 226

                                    
Query: 241 ctactgggggatgtatctgtgaaga 265
           |||||||||||||| ||||||||||
Sbjct: 225 ctactgggggatgtgtctgtgaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 662
Length adjustment: 9
Effective length of query: 256
Effective length of database: 653
Effective search space:   167168
Effective search space used:   167168
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)