BAC Information

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BAC

Clone NameMSMg01-086A23
Chromosome11 (Build37)
Map Location 52,923,907 - 52,924,433
singlet/doubletsinglet
Overlap geneFstl4
Upstream genePpp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneLOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086A23.T7 (MSMg01no086_a23.b1)MSMg01-086A23.TJ (MSMg01no086_a23.g1)
ACCAG305472AG305473
length730794
length of high quality
(start - end)
546 (34 - 579)417 (130 - 546)
definitionCHROMAT_FILE: MSMg01no086_a23.b1 PHD_FILE: MSMg01no086_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:38 2005CHROMAT_FILE: MSMg01no086_a23.g1 PHD_FILE: MSMg01no086_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATAGGTCCAGGATCCGCGGAATTCTACATG
ATCATTTACCCTCCCCTCAGAGGGCCAAGGGTCTGAGCGCTGAGGGAGGG
CATTGTGGCTTCCAGAAGCTTCCTGTCACGAAGACCCAGCCCATTATGTG
AAGCCCATCCTCTTCGGATTGAGTTAAGTCATACCTACAGTGTGTTAGTC
AGTTTTCTGTTGCTATAATATATATGTATATTACATATTTGTATGTATAT
GTGTATATATTATATATGTGAATATATAATATAGAGATGAGAGAAATTAA
TTTACATGGAAAAGGGCTTAGTTTGGCTCATAGTATTAGAGGTTTCAACC
CATGGTCTCTTGGCTCCCTCACTTTAGGCCTGTTGAGGCACTGTATGTTA
CCATGGGAACAAGTAGCAGAAGAAACCTGTGTATATCATAGAGGCTGAAG
AACAACGCAAGATAAGAAGATGCCGGGGCCTCAGGATCCCCTTCAAGGGC
ATACCCCCAATGATCTGACTCTCTTCCGCTAGACTCTACCCCCTATGCTC
TTCTACCTCCCAACAGGGCCAACAGCTGGAGAACAAACACATGGCCCTAT
GGGAAACATCTAAAATTCAGACCATAATATAATCAGCCCAGTACCAAGCA
TTAACTGGTTCTGGGCTTTGTCAGTGAGCATGGACGGGCTTTGCATCTAC
CATATGGAAAACCTAGGGTGCGAATGGTCC
TTTTTTTTNTCTNTTNTTTTTTCTTTTCCTCTTCCCTCTCTTCTCCTTCT
CCCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCGCCAATCCACTCTGTAGACCAGGCTGGCCTCGA
ACTCAGAAATCTGCCTGCCTCTGCCTCCCCAGTGCTGGGATAAAAGGCAA
GTGCCACTATCGCCCGGCTGGGGGGCATTTTCTTGATTGCTAATTGATAA
AGGAGGGCCCAGCCTACTATGGGAAGTTCCATGTCTAAACATGTGGGCTT
CATGAACATGAGCCTGAAAGCAAGCAGTGTTCTTCAGTGGCCTCTACTTC
AGTCCATGGCTCCAGGATTCAGCTTGAGTTCCTGCCTGATCTTGACAGAG
GGCTGTGCCTGTAAGAGGAACAAAACCCTTGCCTTTTCAAGTTGCTTTGC
TCACATCGTCTATCACAACAATTGGAAGTAAAGTAGGACAGGCTAGTTCA
AAGACGTCCAGAAAGCGTGGTTTGCAGATCCCAGAGCACGAATGCAGGTT
TTCAGAGGAGACTACAGAGGGCCTTCATCTCTCAACGACCCCTTTCCATT
TAGTGGGGAGGCCTTTCCGGATGGAGGGAAGCTGCCATTCATATATGTAG
CCGCGAGACCTGCATGGATTTGGCCCACAGCCAGGCTGGTGGATGGACAA
GTCTGTGAAATGCACACACTGATACCAATGCAATGGGGTGAATATTGGCG
CATGCAAGTGAATAACAAGGCACAGACTGTTTCCAGAAACCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_a23.b1 MSMg01no086_a23.b1 CHROMAT_FILE:
MSMg01no086_a23.b1 PHD_FILE: MSMg01no086_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:38 2005
         (546 letters)



>mm_chr11_52923684_52924633
          Length = 950

 Score =  888 bits (459), Expect = 0.0
 Identities = 507/527 (96%), Gaps = 8/527 (1%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctcccctcagagggccaagggtctgagcgctgagggagggcattgtggcttccagaagct 87
           |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 224 ctcccctcagagggccaagggtctgagctctgaggaagggcattgtagcttccagaagct 283

                                                                       
Query: 88  tcctgtcacgaagacccagcccattatgtgaagcccatcctcttcggattgagttaagtc 147
           |||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct: 284 tcctgtcacgaagacccagcccattatgtgaaacccaccctcttcagattgagttaagtc 343

                                                                       
Query: 148 atacctacagtgt----gttagtcagttttctgttgctataatatatatgtatattacat 203
           |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atacctacagtgttagtgttagtcagttttctgttgctataatatatatgtatattacat 403

                                                                       
Query: 204 atttgtatgtatatgtgtatatattatatatgtgaatatataatatagagatgagagaaa 263
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 404 atttgtatgtatatgtgtatatattatatatatgaatatataatatagagatgagagaaa 463

                                                                       
Query: 264 ttaatttacatggaaaagggcttagtttggctcatagtattagaggtttcaacccatggt 323
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 464 ttaatttacatggaaaagggcttagtttggctcatagtattagaggtttcaacctatggt 523

                                                                       
Query: 324 ctcttggctccctcactttaggcctgttgaggcactgtatgtta----ccatgggaacaa 379
           |||||||||||||||||||||||||||||||||||||| |||||    ||||||||||||
Sbjct: 524 ctcttggctccctcactttaggcctgttgaggcactgtgtgttagttaccatgggaacaa 583

                                                                       
Query: 380 gtagcagaagaaacctgtgtatatcatagaggctgaagaacaacgcaagataagaagatg 439
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 584 gtagcagaagaaacctgtgtatatcatagaggctgaagaacaacgcaagaaaagaagatg 643

                                                                       
Query: 440 ccggggcctcaggatccccttcaagggcatacccccaatgatctgactctcttccgctag 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 644 ccggggcctcaggatccccttcaagggcatacccccaatgatctgactctcttcctctag 703

                                                          
Query: 500 actctaccccctatgctcttctacctcccaacagggccaacagctgg 546
           |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 704 actctaccccctgtgctcttctacctcccaacagggccaacagctgg 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 950
Length adjustment: 10
Effective length of query: 536
Effective length of database: 940
Effective search space:   503840
Effective search space used:   503840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)