BAC Information

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BAC

Clone NameMSMg01-086I10
Chromosome11 (Build37)
Map Location 19,089,943 - 19,090,342
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627696, LOC627716, LOC665796, Meis1
Downstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086I10.T7 (MSMg01no086_i10.b1)MSMg01-086I10.TJ (MSMg01no086_i10.g1)
ACCAG305813AG305814
length744733
length of high quality
(start - end)
404 (116 - 519)363 (136 - 498)
definitionCHROMAT_FILE: MSMg01no086_i10.b1 PHD_FILE: MSMg01no086_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:18 2005CHROMAT_FILE: MSMg01no086_i10.g1 PHD_FILE: MSMg01no086_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNTTTTTTCCTTTTCCTTTTTCCCCTCTTTTCCCC
CNCTCNCNNCCCGCAGCCCCACTCTATAAXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCGCGGAATTCCCAGGCTCCCCAGCCATCACTATAT
GGCACTTCCTTTGTAACACCTCTCAACTGGACTCCAGGTGGAGACGTGAA
GGGAGAAAGAACACTGCTCAGAACAACTATCGTTGCACAAGCTCACCTAG
CCTAGACTTTTCTCACTGAGCCCTCACATGGGACCAGAGACTGCCTTACT
CTACAAAGGAGCACACAGGTACAGTATTTTATGGTTCATTTTTTTATTGC
TCTTGCATTTAAAAGTCATGCACCTCCTTTTTCAATATAAGCACACAACC
CCTCTGCCAGATGTAAGTCACACGGTGTTTTATCTTGGTATTTCAATGCA
TGGTGAGATTTCCTCCTGTCATTGCCACATCCACCTTACTGTCCAGACAA
ACAGCTCCCAGAGATCTGGGCGGCCGCCAAGAAAGGGTGCATTCTCTTGT
CTATTTAAAGTGCCCTTGTTATTCAAAAAGATTACTTTCTATTAACAACA
GATGCCTGGAATCTTCCTTCTGCAATATACTGTAATTAACAATGCAAATT
GTGAAATACAATCTCACTATTTATCACATAAACGCGAGCAGGTGTATATG
TACTTACAGGCCTAAACATGCATAATGAAAATGCACATACCTAA
NNNNNNCCCCNNNNCCCCNNNNCCCCCCCTCCCCCCCTCCCCCCCCCTNC
CCTACCTNTCCTCTATGATATGNGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATAC
CGAATGGCAGAGAAGCACCTGAAAAATGTTCAACATCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAAT
GTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAG
AAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCA
CTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACC
GGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAA
CTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATA
ATAGCCAGAATCTGGAAAGAACCCAGATGCCCCTCAACACAGGAATGGAT
ACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAA
AGCAATGAATTCATGAAATTCCCAGCCAAATGGATGGACCTGGAGGGCAT
CATCCTGAGTGAGGTAACACATTCTCAAAGGAACCCTCTCAAAATGTACT
CACTGATAAGTGGATATTCACCCCAAAACTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_i10.b1 MSMg01no086_i10.b1 CHROMAT_FILE:
MSMg01no086_i10.b1 PHD_FILE: MSMg01no086_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:18 2005
         (404 letters)



>mm_chr11_19089739_19090542
          Length = 804

 Score =  735 bits (380), Expect = 0.0
 Identities = 395/400 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccaggctccccagccatcactatatggcacttcctttgtaacacctctcaactg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gaattcccaggctcctcagccatcactatatggcacttcctttgtaacacctctcaactg 545

                                                                       
Query: 65  gactccaggtggagacgtgaagggagaaagaacactgctcagaacaactatcgttgcaca 124
           ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 544 gactccaggtggagacgtgaagggagaaagaacactgttcagaacaactatcattgcaca 485

                                                                       
Query: 125 agctcacctagcctagacttttctcactgagccctcacatgggaccagagactgccttac 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agcccacctagcctagacttttctcactgagccctcacatgggaccagagactgccttac 425

                                                                       
Query: 185 tctacaaaggagcacacaggtacagtattttatggttcatttttttattgctcttgcatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tctacaaaggagcacacaggtacagtattttatggttcatttttttattgctcttgcatt 365

                                                                       
Query: 245 taaaagtcatgcacctcctttttcaatataagcacacaacccctctgccagatgtaagtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taaaagtcatgcacctcctttttcaatataagcacacaacccctctgccagatgtaagtc 305

                                                                       
Query: 305 acacggtgttttatcttggtatttcaatgcatggtgagatttcctcctgtcattgccaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acacggtgttttatcttggtatttcaatgcatggtgagatttcctcctgtcattgccaca 245

                                                   
Query: 365 tccaccttactgtccagacaaacagctcccagagatctgg 404
           ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 244 tccaccttaatgtccagacaaacagctcccagagatctgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)