BAC Information

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BAC

Clone NameMSMg01-086M08
Chromosome11 (Build37)
Map Location 106,367,500 - 106,367,814
singlet/doubletsinglet
Overlap geneTex2
Upstream geneEG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277
Downstream genePecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086M08.T7 (MSMg01no086_m08.b1)MSMg01-086M08.TJ (MSMg01no086_m08.g1)
ACCAG305991AG305992
length671769
length of high quality
(start - end)
356 (50 - 405)301 (145 - 445)
definitionCHROMAT_FILE: MSMg01no086_m08.b1 PHD_FILE: MSMg01no086_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:38 2005CHROMAT_FILE: MSMg01no086_m08.g1 PHD_FILE: MSMg01no086_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTCCTATATCCCAGAGATCCGCGGAATTCAGTTGCACTACTCACATTC
ATAATGTAACTGTCACTACAATGCACTCTCTATTTTTTTTTCCTTAAATT
CTTGTTACATGTTCGTTTGCACACACATTCAACAGTCAGAGACAGCTTCT
GGGAGCTGGTTCTTTTCCTTCAACCTCTGGATCTTGGGACTGAACTCAAT
TTATCAGGCTTGGCAGTCAGCGAGCCTTTCTACTGAGCCATTTAACCAGC
CCTCCAGAACTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGT
ACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTCATTA
CGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGCCACCT
TTGGAAGAGCAGTCAGTGCTCTTAATCACTGAGCCATCTCACCAGCCCTG
AACGTTTTTTTTATAAAGGATTTGTATGCCCACACGATTGTGTGTGGAGG
ACCTTGATGCAAACAGGGCGCTAGCTGTTGCTTACGACCACCTTTGAAAC
CGTTTCTCTCGCTCGACCTGGTTAACATATATTCTCCACTATTTCGGTAA
CCAGAAAGCCCTCACCCTCTGTGCTTCCCTTAGAGCTGGCACTTCCATTC
CATGTATACCAAGCTGCCCAT
NNNNNNNNTTTTNNNNNNNNNNNNNTTTTCCCCCCCNNCCCTTTCCTCTT
TCCTCCCNTTTTCCTCTNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCCT
ACTCCTAGCTTCCATAAAATTTCAAGACGGCCATCCTTCAAATATTGGAT
CAAGTGACTGGGGTGGGGCAGAATGGTTCAGTGGTAGAGTGCTTGCTTAG
CAAGTGCCAGGCCCTGAGTTTGATTCCCATCACAAGTAAAACAAAACAAA
ATCTGATCAAAATCTGAAAGAAACAGCTCATACCAGGCCCGGGATACCGC
TACTGTCCCTGGTGGTAGAATGTAGTAAGCAGGTTTGGAGGTTGAACTCT
GGCTTAGGTGTTATTTAAGGGAGGCCCGAACTTTAGATTCCCAAGATAGC
TGTTGCTGGCATCGTTTCCTTGCATGTTAACTAAACTAAGTAAAGCAGCA
GCCTCAGAGAGCATCTTTCCTGCCCACCGGCTAGGTGTTGCTGGCTGCCC
AGCTCCTGACTTCATCCAGGCCAAAGGCATTGCCTGGCCAGTTTCTGCAG
GCTTGCTGGTATTGGGCACCATCATCCTGCCTTTAACACATCTGCTGGGC
TTCTTTGGAGTCTATTTCATGTAAAAGCTTCAGGGTCTTTTGAAACCATT
CCTATTATCTTAATCCCAGTTTTGAACACCTGGTCTTTGTTTCTGGCATG
TCTCTCCAGGTCTTCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_m08.g1 MSMg01no086_m08.g1 CHROMAT_FILE:
MSMg01no086_m08.g1 PHD_FILE: MSMg01no086_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:38 2005
         (301 letters)



>mm_chr11_106367314_106368014
          Length = 701

 Score =  489 bits (253), Expect = e-143
 Identities = 293/315 (93%), Gaps = 14/315 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccctactcctagcttccataaaatttcaagacggccatccttcaaatattggatcaag 60
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 187 acccctactcctagcttccataaaatttcaagacagccatcctttaaatattggatcaag 246

                                                                       
Query: 61  tgactggggtggggcagaatggttcagtggtagagtgcttgcttagcaagtgccaggccc 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgactggggtggggcaggatggttcagtggtagagtgcttgcttagcaagtgccaggccc 306

                                                                       
Query: 121 tgagtttgattcccatcacaagtaaaacaaaacaaaatctgatcaaaatctgaaagaaac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 307 tgagtttgattcccatcacaagtaaaacaaaacaaaatctgatcaaaatctgaacgaaac 366

                                                                       
Query: 181 agctcataccaggcccgggatacc--------------gctactgtccctggtggtagaa 226
           ||||||||||||||||||||||||              ||||||||||||||||| ||||
Sbjct: 367 agctcataccaggcccgggataccaggcccgggataccgctactgtccctggtggcagaa 426

                                                                       
Query: 227 tgtagtaagcaggtttggaggttgaactctggcttaggtgttatttaagggaggcccgaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 427 tgtagtaagcaggtttggaggttgaactctggcttaggtgttatttaagggagacctgaa 486

                          
Query: 287 ctttagattcccaag 301
           ||| |||||||||||
Sbjct: 487 cttaagattcccaag 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)