CAAAATTTGCGGCGCTATACGACTCCTATATTCAGAGATCCGCGGAATTC
CTAGTGTTTCCGACCACATTCAACACCCATTCATGCACAGATGGGAAACT
TGTTAGCTACTGTGAACCCCGCTGCAATCCACATAGAAGGTGGACAACTT
TCTGAAAAGTCGATGCTCCTTCCTTAGGGAAGTACCCATGATAAGACTGT
TGAGTCACATGGTTGAACCATATTCCTCCATATGGTTTTACTCAGAAATA
ACACCAATATCCACACCAAAGTGGACACAGCTTCCATCTTCCTCATACTT
TTGTCAACCATTTCAATTCTTTTGTCCCTTTAATGGTCATTCTCACTGGA
TAAAGATATGAAATGAACTATTTGCTTTTATTGTTTTGCTACAGTATAAT
TATTAGTGGAAAAAATATTGGGAGGCTGGAGACTCCAGTCATCGTTCCCT
CTTCTCATTCTCTCTCGTTTCCATAAACACACAAAGGTACCTTTAATATA
TCCTGCTATTTTATAACACTTTTCTTANTCAATTATGACTAGGACAGAGT
ATTCAAAGCCTAAAGACTGTGTAATTGAAAACAGAGCAAGACCATCTCTG
TTATTTTGAGTTTCCTTAGAGGCACAGAATGAATGTATATTCATATTAGA
AATCATTTATATTTGCTTAGACCTACATAGCCCCTTCAAACTAATTCATT
ATCA

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAAGGGGTGACC
TATAGAAGGATTTCCGAAATTCCTGATCTTTCCAGACTTTTATCATGAAT
GGGTGTTGGATTTTATCAAAAGCTTTCTTAGCATGTATTGAGATGATTAT
GTGATTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGGTT
TCCATATATTGAACCATCCCTGCATCCCTGGGATGAAACTTACTTGATCA
TAATGAATGATTGTTTAGATGTGTTCTTGGATTAGGTTTCCAAGAATTTT
ATTGAGTAATTTGCATTGATATTCTTAAGAGAAATTGGTCTGAAGTTCTC
TTTCTTTGTTGGGTCTTTATGCGGTTTAGGTATCAGAGTAATTGTAGCTT
CTTAGAATGAACTGGGTAGAATACATTCTGTTTCTATTTTGTGGAACAGT
TTGAGGAGTATTGGAATTAGGTCCTCTTTGAAGGTCTGATAGAACTCTGC
ACTAAACCCATCTGTTCCTGGGCTTTTTTGGTTAGAAGAGGATATAGGAC
TGTTTAGATCATTAATCTGATCCTGATTTAACTTTGGTACCTGATATCTG
TCTAGAAAATTGTCTATTTAATCCAGGTTTTCCAGTTGTTTTGAGTATAA
GTTTTTCTAGTAGGATCTGATGATTTTTTGGATTTCCTCACGTTCTGTTG

Query= MSMg01no086_n18.b1 MSMg01no086_n18.b1 CHROMAT_FILE:
MSMg01no086_n18.b1 PHD_FILE: MSMg01no086_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:45 2005
         (559 letters)



>mm_chr11_39513237_39514195
          Length = 959

 Score =  990 bits (512), Expect = 0.0
 Identities = 547/559 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacattcaacacccattcatgcacagatgggaaacttgttagctactgtgaaccccgctg 60
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||||
Sbjct: 201 cacattcaacacccattcatgcacagatggaaaacttgttagctactgtgaacagtgctg 260

                                                                       
Query: 61  caatccacatagaaggtggacaactttctgaaaagtcgatgctccttccttagggaagta 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 caatccacatagaaggtggacaactttctgaaaagccgatgctccttccttagggaagta 320

                                                                       
Query: 121 cccatgataagactgttgagtcacatggttgaaccatattcctccatatggttttactca 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 cccatgataagactgttgagtcacacggttgaaccatattcctccatatggttttactca 380

                                                                       
Query: 181 gaaataacaccaatatccacaccaaagtggacacagcttccatcttcctcatacttttgt 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaataacaccaatatctacaccaaagtggacacagcttccatcttcctcatacttttgt 440

                                                                       
Query: 241 caaccatttcaattcttttgtccctttaatggtcattctcactggataaagatatgaaat 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 caaccatttcaattcttttgtccctttaatggtcatgctcactggataaagatatgaaat 500

                                                                       
Query: 301 gaactatttgcttttattgttttgctacagtataattattagtggaaaaaatattgggag 360
           ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaattatttgtttttattgttttgctacagtataattattagtggaaaaaatattgggag 560

                                                                       
Query: 361 gctggagactccagtcatcgttccctcttctcattctctctcgtttccataaacacacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctggagactccagtcatcgttccctcttctcattctctctcgtttccataaacacacaa 620

                                                                       
Query: 421 aggtacctttaatatatcctgctattttataacacttttcttantcaattatgactagga 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 aggtacctttaatatatcctgctattttataacacttttcttaatcaattatgactagga 680

                                                                       
Query: 481 cagagtattcaaagcctaaagactgtgtaattgaaaacagagcaagaccatctctgttat 540
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagagtattcaaagcctaaagagtgtgtaattgaaaacagagcaagaccatctctgttat 740

                              
Query: 541 tttgagtttccttagaggc 559
           |||||||||||||||||||
Sbjct: 741 tttgagtttccttagaggc 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)