BAC Information

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BAC

Clone NameMSMg01-087K03
Chromosome11 (Build37)
Map Location 37,584,106 - 37,680,619
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2, LOC100039148
Downstream geneLOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087K03.T7 (MSMg01no087_k03.b1)MSMg01-087K03.TJ (MSMg01no087_k03.g1)
ACCAG306609AG306610
length696704
length of high quality
(start - end)
465 (44 - 508)573 (74 - 646)
definitionCHROMAT_FILE: MSMg01no087_k03.b1 PHD_FILE: MSMg01no087_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:49 2005CHROMAT_FILE: MSMg01no087_k03.g1 PHD_FILE: MSMg01no087_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,680,158 - 37,680,619)(37,584,106 - 37,584,678)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTCCTCGTCTATAAACTTCTATTTCTTTTAAGACTTGATGCAACTC
CATCTCCTACATTTCATATTTTGTTTTTCTTCAGAGCCCAGACCAGATCA
GAGCCATGTGTGTGCAGGCATTTAGCATGCCATCTGCTAATCTCCATGGC
TACGTTTACAACGTCATTACATAATTACCTGTTTATTGTTTCCACTCCCC
CACTAGAGTGATGTTTTTGTTTCTGTTTTTAAATAATTGACTGTTTTTTG
TTATGGCGATACTAATTGGTTCTTTTTTTAAATAGCCACCTGGTATAATT
CCTCTTTGCAGCATTTTTAAGAATAATTTCTATTCTATATTTTAGATGTG
ATTTCATCATTTCTCTTTGCAATATGCCAATCACAATCAGTTTAAAGTCA
TCTTTGTTGTGTACATTAAGACTGTTACATTTCCATCCTACTGGAGTAAA
TTGCTCACCTGGTTCTTGGTTTTCTATTTTCTAATCTTGGAATATTTTCT
AAATAGATATAGAATTGGGGATCTAAATTTCATCTTCATTGGTAACTTTC
CTTCAACCTGTAACAATCTGCCTGTTAACTGGTCCTCCTAGTCTTATCTC
TATGGCTTAGAATTTCTGTCCTATGCCCATAATTTGTCCCAAGACC
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTAGAATATCCCCATCATGCAAAGG
GAAAGGATCAGAAGGATGCAGAGTAGAGGCTGCAGAAAACTGATTTTCAG
AAAACATTGTGTCAAATGTGAATTAAATCTGAACAACAGCCTTTCAAATG
CAAATTCTTCTGAAGAGATGTCATTGATATGCAACCTCGGAAAACCTTTC
AAAAGAAATAAAATGGATAAATGTGATAATTAAGATCTCTATTTATAGGA
AAATGATCAGATTACGTTTGTCCAGAAATGTTTTTGTACCTGCAACACAG
AGGGCAGAAATAGGGAGTAAGGATCGATTTTGAAATTTGCAGGTTGGAGG
TGAAAATGGAATGATAGCTTGCCTGACAGAGGTGGGGATTTTCCTCTGCT
ATGCTAAGACCTATTATTATGCACCTATAATTGCCAAGGCCCCTCCTGAC
CTCTATTCACTCTTCCCTGTGAAGTCTGGTTCTAGCCATCCTAGCAACAT
CACCCTCATTTCATGCTGGATAGTAGCTGCTCAGCAATCTGCAGCAGTGT
GCCAGTCTAGAGTAATGTTTAGGAGAAGCTGACCCACCCGATGCAAGAAG
CCAGGAGCTTTTATATGAAATGCTTTCTGTAGACAGAGCTGGAAGTAGAA
GAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_k03.b1 MSMg01no087_k03.b1 CHROMAT_FILE:
MSMg01no087_k03.b1 PHD_FILE: MSMg01no087_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:49 2005
         (465 letters)



>mm_chr11_37679955_37680819
          Length = 865

 Score =  878 bits (454), Expect = 0.0
 Identities = 460/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctcctcgtctataaacttctatttcttttaagacttgatgcaactccatctc 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 ggaattctctcctcgtctataaacttctatttcttttaagatttgatgcaactccatctc 606

                                                                       
Query: 64  ctacatttcatattttgtttttcttcagagcccagaccagatcagagccatgtgtgtgca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctacatttcatattttgtttttcttcagagcccagaccagatcagagccatgtgtgtgca 546

                                                                       
Query: 124 ggcatttagcatgccatctgctaatctccatggctacgtttacaacgtcattacataatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ggcatttagcatgccatctgctaatctccatggctacgtttacaacgtcattacataatt 486

                                                                       
Query: 184 acctgtttattgtttccactcccccactagagtgatgtttttgtttctgtttttaaataa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 acctgtttattgtttccactcccccactagagtgatgtttttgtttctgtttttaaataa 426

                                                                       
Query: 244 ttgactgttttttgttatggcgatactaattggttctttttttaaatagccacctggtat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttgactgttttttgttatggcgatactaattggttctttttttaaatagccacctggtat 366

                                                                       
Query: 304 aattcctctttgcagcatttttaagaataatttctattctatattttagatgtgatttca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aattcctctttgcagcatttttaagaataatttctattctatattttagatgtgatttca 306

                                                                       
Query: 364 tcatttctctttgcaatatgccaatcacaatcagtttaaagtcatctttgttgtgtacat 423
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcatttctctttgcaatatgctaatcacaatcagtttaaagtcatctttgttgtgtacat 246

                                                     
Query: 424 taagactgttacatttccatcctactggagtaaattgctcac 465
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taagactgttacatttccatcctactggagtaaattgctcac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no087_k03.g1 MSMg01no087_k03.g1 CHROMAT_FILE:
MSMg01no087_k03.g1 PHD_FILE: MSMg01no087_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:50 2005
         (573 letters)



>mm_chr11_37583906_37584878
          Length = 973

 Score = 1085 bits (561), Expect = 0.0
 Identities = 570/573 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttagaatatccccatcatgcaaagggaaaggatcagaaggatgcagagtagaggctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttagaatatccccatcatgcaaagggaaaggatcagaaggatgcagagtagaggctgc 260

                                                                       
Query: 61  agaaaactgattttcagaaaacattgtgtcaaatgtgaattaaatctgaacaacagcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaactgattttcagaaaacattgtgtcaaatgtgaattaaatctgaacaacagcctt 320

                                                                       
Query: 121 tcaaatgcaaattcttctgaagagatgtcattgatatgcaacctcggaaaacctttcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaatgcaaattcttctgaagagatgtcattgatatgcaacctcggaaaacctttcaaa 380

                                                                       
Query: 181 agaaataaaatggataaatgtgataattaagatctctatttataggaaaatgatcagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaataaaatggataaatgtgataattaagatctctatttataggaaaatgatcagatt 440

                                                                       
Query: 241 acgtttgtccagaaatgtttttgtacctgcaacacagagggcagaaatagggagtaagga 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 acgtttgtccagaaatgtttttgtacctgcaactcagagggcagaaatagggagtaagga 500

                                                                       
Query: 301 tcgattttgaaatttgcaggttggaggtgaaaatggaatgatagcttgcctgacagaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcgattttgaaatttgcaggttggaggtgaaaatggaatgatagcttgcctgacagaggt 560

                                                                       
Query: 361 ggggattttcctctgctatgctaagacctattattatgcacctataattgccaaggcccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggattttcctctgctatgctaagacctattattatgcacctataattgccaaggcccc 620

                                                                       
Query: 421 tcctgacctctattcactcttccctgtgaagtctggttctagccatcctagcaacatcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctgacctctattcactcttccctgtgaagtctggttctagccatcctagcaacatcac 680

                                                                       
Query: 481 cctcatttcatgctggatagtagctgctcagcaatctgcagcagtgtgccagtctagagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctcatttcatgctggatagtagctgctcagcaatctgcagcagtgtgccagtctagagt 740

                                            
Query: 541 aatgtttaggagaagctgacccacccgatgcaa 573
           | |||||||||||| ||||||||||||||||||
Sbjct: 741 agtgtttaggagaaactgacccacccgatgcaa 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)