BAC Information

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BAC

Clone NameMSMg01-087M19
Chromosome11 (Build37)
Map Location 4,005,598 - 4,005,912
singlet/doubletsinglet
Overlap geneSec14l2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik
Downstream geneLOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087M19.T7 (MSMg01no087_m19.b1)MSMg01-087M19.TJ (MSMg01no087_m19.g1)
ACCAG306723AG306724
length797704
length of high quality
(start - end)
71 (317 - 387)315 (56 - 370)
definitionCHROMAT_FILE: MSMg01no087_m19.b1 PHD_FILE: MSMg01no087_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:03 2005CHROMAT_FILE: MSMg01no087_m19.g1 PHD_FILE: MSMg01no087_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNTTTTTTTTNNGGGCCTCTTTCCCCTCCCCCCNNNCCCCCCC
AAAACNAAAATCTATATTTGCGGCGCTAAACGACTCACATTTTCGAACCT
GCNCGGAANNCNCGGCACTTGCCGNAAGAGAGACGAANANCAGCGNGCAG
CTGGAGCTNCCAGCCGGCNCNNAGCCGCCCCCGGGNNNGANGGNNNACAC
GGGGNNAGGCGCGGNCACAACCNGAGACTTGAGGACGACCCNNNGGGCCC
CGCACAGGCCCGGGNNACGANAGGNNCACCCNCAGCAGACGGAACCCGCC
ANCCGCGAGATATTGGTGGTGGTCAATTCTCAAGGGAGAAAATGACCTTT
TTTTTTTCTTTAGAAAAGGGGAAAGGTTTTTTTTTTTTACAAGCAGAAGC
CAGCACAGGACAAGCCCTGGTTTTTTCCCCCCCCACCCCCCTCTCTTTCT
TTCCTATGTAAACTTTGTTTTTCCCCTGGCCCCAACTTTAAAAAATAAAT
ATTTCATGCGCAACGCTTGCTGTCTTTTCTTTTCTTCATTCCGAAGTGCT
TACTCCGAGTAAAATTGATACGCATTTCCACGGGCCACGTAGTTTCAGAT
AGGCCTGGCCGCCGCGTCAGTGTTCTCGCCACCCACTGTTTTCTCTTGGC
TTGCTGACACGACAAACTCATCGGAGGTTGTTGTTTCACTGCCTAGGTTG
CGGTCTTCATTTCGGGTTGTCGTTTGTCGGCTGCTCCGCTTATGTTGCGC
TTGAACCACAGCAGATCCCTTTTTTTTTTTTTTTGTTTCAATCCCAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAGGCCAGCCTTGGTTACTGAGACCCTGTTACAAAGAGAGGGGCT
TAGGCGCCAGAGTGCCAGTGTTGGCTGTGGAGGTATTTCCTAGAGATGGG
AAAGCCTCTGCCTTAACCCAGCTCTCCTGCTCAGCCGGGAGAAGATAGAA
AGTCAGAGCAATCAGTTTTTATGGTTTCTGGTTTTACTGCTGCTACCACC
CACCAAGTGCTGAGGTGGTTTGGTTCCCTGGCAGCAGAGCTATGTAGGAG
GTTCAGTCTGTTCTCCTACCCACACTTAAAATTCTTTCAACCAAATGTGC
CTTAGGCACATTGGGAAGAATCGAGATCCCCATATATAGGCATACACAAA
AGTTACTTCCGGGTGGTCACTGGAGTTTAGCAGTGTCAATGAAATCACCC
CAGTGCCACAGATACCTGAGGGTGGGCAGACTCAGGACAGTCAGAGTTAC
AGTCATCTGTGCAGAGGACGTGAGGCTAGTCCCCGGCCTGTAGCTGCTGA
CTGATAGCCAGCTGATAGTCTATATAATTATAGTGGTTTGTGGCATTAAG
GTATTGTGTCAGGCTAGTCTTTCTTAGGAAAATAGTTCTCAGCATTGCTG
CTCCATTCAGGATAGGATTTGGCTCGTAAAACTATAATAGCAGCCAATCT
GCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_m19.g1 MSMg01no087_m19.g1 CHROMAT_FILE:
MSMg01no087_m19.g1 PHD_FILE: MSMg01no087_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:03 2005
         (315 letters)



>mm_chr11_4005398_4006112
          Length = 715

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccagccttggttactgagaccctgttacaaagagaggggcttaggcgccagagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aaggccagccttggttactgagaccctgttacaaagagaggggcttaggcgccagagtgc 456

                                                                       
Query: 61  cagtgttggctgtggaggtatttcctagagatgggaaagcctctgccttaacccagctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cagtgttggctgtggaggtatttcctagagatgggaaagcctctgccttaacccagctct 396

                                                                       
Query: 121 cctgctcagccgggagaagatagaaagtcagagcaatcagtttttatggtttctggtttt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cccgctcagccgggagaagatagaaagtcagagcaatcagtttttatggtttctggtttt 336

                                                                       
Query: 181 actgctgctaccacccaccaagtgctgaggtggtttggttccctggcagcagagctatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 actgctgctaccacccaccaagtgctgaggtggtttggttccctggcagcagagctatgt 276

                                                                       
Query: 241 aggaggttcagtctgttctcctacccacacttaaaattctttcaaccaaatgtgccttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aggaggttcagtctgttctcctacccacacttaaaattctttcaaccaaatgtgccttag 216

                          
Query: 301 gcacattgggaagaa 315
           |||||||||||||||
Sbjct: 215 gcacattgggaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)