BAC Information

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BAC

Clone NameMSMg01-087M23
Chromosome11 (Build37)
Map Location 78,980,094 - 78,980,490
singlet/doubletsinglet
Overlap genenone
Upstream geneNek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1
Downstream geneLOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087M23.T7 (MSMg01no087_m23.b1)MSMg01-087M23.TJ (MSMg01no087_m23.g1)
ACCAG306730AG306731
length642783
length of high quality
(start - end)
397 (36 - 432)49 (323 - 371)
definitionCHROMAT_FILE: MSMg01no087_m23.b1 PHD_FILE: MSMg01no087_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:04 2005CHROMAT_FILE: MSMg01no087_m23.g1 PHD_FILE: MSMg01no087_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:04 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AAGATCCGCGGAATTCCCTGCTGTTACGATTCAGTGGAGTGGACTGGGCC
TGCTGGCCAGCTATGGTCTATAAGGACACTCTATTATAAGAGCAAGTCTT
CTCTCCCAAATTACTCCTCATTGGCAGGGCATCCTTCACTGGGAAGGGCA
GGGACCTGAAAGGCCCAAATGATGTCAGGGCAAGGGACAAGGACCTTCTA
CAACTTACAACCAGCAAGTGGGAGATGAGCCAACCACTCAGACCTTGAGT
CCCCACTCTGGACCTTGCAGGCACACTCCCTAATTTCTCCTCTTAGAAAC
ACCCTATTACTAGGTTATTCCTAGTCTCACCCAGGCCACTCCTTCCCCAT
AAAACCTGCCTCTGTGTCCCATTTCCTGGGATGTAAGATTTCGAGGAAAC
AGAGAAGGGACCAAGGCTCCTTGGTGTGGAGGAACAGTGTATCTTTCATT
ACTGGAAGTCAAGGCCTCTCTCTGAGGAGTAGGAAGATGGATCTGACTTT
GTAAGCAAAGCAGTAGCCTCTTGCCCTGCTGCATCTTGTAAAGACATCTA
AAAGCCCGTTGATACGGCTACGACAATAGGCGACCTCACTAAAAATACTC
CCCCATAGACAATCATGTAGGTGTTGTCCTCTGGCTTCTCGT
NNNNNNNTTTTNNNNNCCCCCCCCNNNNNNNCCCCCCCCCCCCCCTTTTC
NCCCCTCCTCTTCCTCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACCGTCAG
GTCTACACAGGGAGACACTGCCTCACATAGATAGATCCGATAGATAGATA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAAACAT
TGTGGGAGGATTCTCTACTTACTCCTCTAAGTCTTTGTCTGTTTGGTTTT
TCACAGGGCCTTACTATGTATCCCAGGCTGGCCTTAAACTCAGTTCTCCT
ACCTCAGCCTCCCAAGTGATACTACAGGTATCTACCATCATGTCTGGTTA
GAGTACTTCCTCTCTCTTCTCTTCAAGCTTATTTTATCCTCTGTCCAGGG
CCTAGTTTCTCTTCACCTTCCTTTTGTCTTTTTCTTCCTCTTTCCTTTTT
TAAGAAAAGGTCTCTCTTCCTATAGCTCTGGTACTTGCCATGACAAACAG
GCTGGCCTTGAATTCATATAGATCCACTTGCCTCTGCCTCCCTAGGCCTG
AGATTAGTAGAGTGCATCACCACTAACTCTCACCCTCCCGGAACTTTTTA
TAAATCTACCAGTCTCTCCTCTCCTGGGACTCTCTCCTGAGACCCAGCCC
CATCCATATCCCACCCCCACCCCCTGGCATGCCTTATTTATTGAGCCTCA
GAGAGGCTCTCTCTTGTGCTTCACCGTTAGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_m23.b1 MSMg01no087_m23.b1 CHROMAT_FILE:
MSMg01no087_m23.b1 PHD_FILE: MSMg01no087_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:04 2005
         (397 letters)



>mm_chr11_78979894_78980690
          Length = 797

 Score =  737 bits (381), Expect = 0.0
 Identities = 393/397 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagtggactgggcctgctggccagctatggtctataaggacactctattataagagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ggagtggactgggcctgctggccagctatggtctataaggacactctgttataagagcaa 260

                                                                       
Query: 61  gtcttctctcccaaattactcctcattggcagggcatccttcactgggaagggcagggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttctctcccaaattactcctcattggcagggcatccttcactgggaagggcagggac 320

                                                                       
Query: 121 ctgaaaggcccaaatgatgtcagggcaagggacaaggaccttctacaacttacaaccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaaaggcccaaatgatgtcagggcaagggacaaggaccttctacaacttacaaccagc 380

                                                                       
Query: 181 aagtgggagatgagccaaccactcagaccttgagtccccactctggaccttgcaggcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aagtgggagatgagccaaccactcagaccttgagtccccactctggaccctgcaggcaca 440

                                                                       
Query: 241 ctccctaatttctcctcttagaaacaccctattactaggttattcctagtctcacccagg 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 441 ctccctaatttctcctcttagaaacaccctattactaggtttttcctagcctcacccagg 500

                                                                       
Query: 301 ccactccttccccataaaacctgcctctgtgtcccatttcctgggatgtaagatttcgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccactccttccccataaaacctgcctctgtgtcccatttcctgggatgtaagatttcgag 560

                                                
Query: 361 gaaacagagaagggaccaaggctccttggtgtggagg 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaacagagaagggaccaaggctccttggtgtggagg 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)