Query= MSMg01no088_f08.b1 MSMg01no088_f08.b1 CHROMAT_FILE:
MSMg01no088_f08.b1 PHD_FILE: MSMg01no088_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:46 2005
(641 letters)
>mm_chr11_87370150_87371190
Length = 1041
Score = 1060 bits (548), Expect = 0.0
Identities = 570/578 (98%), Gaps = 3/578 (0%)
Strand = Plus / Minus
Query: 64 cctaaatttggagattaaagctaagcaccatcatggctaggtaagatttattattttcta 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 cctaaatttggagattaaagctaagcaccatcatggctaggtaagatttattattttctg 982
Query: 124 gatttacgtgtatgtgtgcaccacatgtatttgagtacctgtggcagccagaaaaaaaaa 183
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 981 gatttacgtgtatgtgtgcaccacatgtatatgagtacctgtggcagccag--aaaaaaa 924
Query: 184 aggtgtctctcacctggagctagacttaaagacagtggtgagctgccgcctctaaaagag 243
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 923 aggtgtctctcatctggagctagacttaaagacagtggtgagctgcctcctctaaaagag 864
Query: 244 cagcaagttttttaaactgctgaaccatctctgtaacctgctatgttgtttttgtagtca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 cagcaagttttttaaactgctgaaccatctctgtaacctgctatgttgtttttgtagtca 804
Query: 304 ggctgatcttgaactcaccctgcaatccaccctggccaccaacttgtaacttttctgcct 363
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 803 ggctgatcttgaactcaccctgcagtccaccctggccaccaacttgtaacttttctgcct 744
Query: 364 ttgattcctgagagtataggcccagatgagggaaataagttttaaacataagaaaatcaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttgattcctgagagtataggcccagatgagggaaataagttttaaacataagaaaatcaa 684
Query: 424 catgtgaatgcttatagaaagagatgaatcaagaagagtgttcagaaatagggagctggt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 catgtgaatgcttatagaaagagatgaatcaagaagagtgttcagaaatagggagctggt 624
Query: 484 tcagcgattaaagcacttggtgcataatcatggggactagttacactttataatcccagg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcagcgattaaagcacttggtgcataatcatggggactagttacactttataatcccagg 564
Query: 544 gcttggaagacagagataggaccccaggagcaagctgcctagccataacagccagaacag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcttggaagacagagataggaccccaggagcaagctgcctagccataacagccagaacag 504
Query: 604 tgagctctggggccaagtgagagacagatgctgcttca 641
|||||||| |||||||||||||||||||||||||||||
Sbjct: 503 tgagctct-gggccaagtgagagacagatgctgcttca 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_f08.g1 MSMg01no088_f08.g1 CHROMAT_FILE:
MSMg01no088_f08.g1 PHD_FILE: MSMg01no088_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:46 2005
(291 letters)
>mm_chr11_87274891_87275581
Length = 691
Score = 545 bits (282), Expect = e-160
Identities = 288/290 (99%)
Strand = Plus / Plus
Query: 1 cagtctagccagtgccacagtcaaatcctgtctcaataacaaacaaataccggccagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cagtctagccagtgccacagtcaaatcctgtctcaataacaaacaaataggggccagagt 260
Query: 61 tggtagtgtactcttataaacccagcattcagaaagatggggcatgtagatcacttttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtagtgtactcttataaacccagcattcagaaagatggggcatgtagatcacttttaa 320
Query: 121 gttcgaggccagcctgggctacatagggaaaccttatctcgaataacaacaaaacgtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcgaggccagcctgggctacatagggaaaccttatctcgaataacaacaaaacgtttt 380
Query: 181 aaagttaaaaatggagcaattcaaaataaatagtatgcagttctggaattgctattttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagttaaaaatggagcaattcaaaataaatagtatgcagttctggaattgctattttcc 440
Query: 241 ccacgtggtttttcgtttgttcctcacaggaggcttcaggcttgagccca 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacgtggtttttcgtttgttcctcacaggaggcttcaggcttgagccca 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
